Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1860 ATGGTGTCCTTTTGCTCTGTGATCTCTCATTCCTTCCACTGCGTTCCCCTTCCAACTCCAAACACTTCACATTTTGTTCGCCGCAACAACCCCCTTCGATGTCAGTACCCACTCTCGCCCCATCCTTCACGTTTCCTTCGTTTACCATGGGGGAGAGAGTCGCCAAGCACCAGAATACGTGCTTCAATTACAGATGTTTCAGTGGATGTAGCTGTAGAGATAAAACGGCTTCCCAAAGGAGAAGCTTGGTCTGTTCACAAGTTTGGTGGAACCTGTGTGGGGAACTCTTCGAGAATAAAGAATGTTGCAgacataattattaatgatgattCAGAGAGGAAATTGGTTGTGGTCTCAGCTATGTCAAAGGTGACAGATATGATGTATGATCTTGTCCACAAGGCTCAATCTCGCGATGAGTCTTATGTATCTGCACTGGATGCTGTTTTAGAGAAGCACAGCTCAACTGCACATGACCTACTTGCTGGAGATGATCTTGCTACTTTCTTATCACAGTTGCATCAAGATATCGGTGACCTCAAGGCAATGCTTCAAGCTATATACATAGCTGGTCATGCAACAGAATCCTTTACTGACTTTGTTGTGGGACATGGGGAGTTATGGTCTGCACAGATATTGtctttagtaattaaaaaaAATGGGACTGACTGCAAATGGTTGGATGCGAGGGAAGTCCTTATTGTAAATCCTACTCGTTCTGATCAAGTTGATCCTGACTACTTGGAATCTGAACAAAGACTTGAGAAATGGTACTCTCGAAATCCATCTAAGGTAATCGTTGCCACAGGATTTATTGCAAGCACACCTCAGAACATTCCTACTACTCTCAAGAGAGATGGAAGTGACTTCTCGGCAGCAATTATGGGTGCTTTGTTTAGGGCTCGTCAGGTCACAATTTGGACTGATGTTGATGGTGTGTATAGTGCAGATCCTAGAAAAGTTAGTGATGCTGTGATTTTGAAGACATTGTCTTATCAAGAAGCATGGGAAATGTCTTATTTTGGTGCCAATGTCTTACATCCACGCACGATAGTTCCAGTTATTCGATATGGTATACCCATTATAATTAGGAATATTTTCAACCTCTCTACTTCTGGAACAAAGATTTGCCATCCTTCTATTATTGGTGATGAAGATAggcagatattaaaaaattatgtcaaaGGCTTTACAACGATAGACAACTTGGCACTTGTAAATGTCGAGGGAACTGGAATGGCTGGTCTTCCAGGTACAGCCAGCGCTATTTTTGGTGCAGTAAAAGACGTTGGAGCTAATGTTATTATGATATCTCAGGCTAGTAGTGAGCATTCTGTGTGCTTTGCTGTGCCTGAGAAAGAAGTAAAAGCTGTTGCTGAGGCGTTGCAGTCTGTATTTCATGGCGCTTTGCATGCTGGTCGTCTTTCTCAGGTTGCGATCATTCCAAATTGTAGTATTTTGGCAGCTGTCGGCCAGAAAATGGCAAGTACTCCCGGAGTTAGTGCCACCCTTTTCGATGCATTGGCTAAGgCCAACATAAATGTCCGTGCTGTAGCACAAGGTTGTTCTGAGTACAATATTACCGTAGTTGTTAAGCGAGAGGATTCTGTAAAGGCTTTACGGGCTGTTCATTCCAGATTTTATCTCTCAAGAACCACCATAGCAATGGGCATTATTGGGCCTGGATTAATTGGAAGCACACTGCTTGACCAGCTAAGCGATCAGGCTGCAATTCTGAAAGAAGAATTTAACATTGATTTGCGTGTAATGGGCATCATGGGTTCAAAGTTGATGCTCCTTGATGATGATACGGGCATCAACTTAGATAAATGGAGAGAAGTtcgagaagaaaaaggagaagtgGCTAATTTGGAAAAATTTGTCCAACACGTGCATGGAAATCATTTTATACCAAACACTGTGTTAGTGGACTGCACAGCCGACTCCGTCATTGCAAGCAATTACGATGACTGGCTGCGCAAAGGAATACATGTGATCACCCCCAATAAGAAGGCAAATTCAGGACCACATTATGAGTATTTGAGGTTAAGAGCTCTTCAGAGGCAATCATACGCACATTACTTCTATGAAGCTACTGTTGGGGCTGGTCTTCCAATTATCAGCACTTTACGGGGCCTTCTTGAGACTGGTGACAGAATATTGCAAATTGAAGGTATCTTCAGTGGCACTTTGAgttacatctttaataacttcAAAGATGGACGGGTTTTTAGTGAGGTagtagctgaagcaagggatgCAGGTTATACTGAGCCCGATCCAAGGGATGACTTGTCTGGAACTGATGTTGCTAGAAAGGTGATAATTCTTGCAAGGGAATCAGGTTTGAAGCTAGAGCTTTCTGATATTCCCGTTGAAAATCTTGTTCCAGAACCATTAAGAGTTAGTGCATCAGCTCAAGAGTTTATGCAACAATTGCCAAAATTTGACCAGGAATTAACAGAGAAATTAAAAGATGCGGAGAGTGCTGGGGAAGTGTTGAGATACGTGGGAGTGGTGGACGTGACTAATCAAAAAGGAGTGGTAAAGCTGAGAAGATACAAGAAGGATCATCCATTTGCACAACTATCCGGATCAGATAATATTATTGCGTtcacaacaagaaggtataaaaACCAGCCTCTAATAGTTCGTGGACCTGGAGCTGGTGCCCAAGTCACAGCTGGCGGAATATTCAGCGACATTTTACGACTTGCCTCGTATCTTGGTGCTCCTTCATAG 2742 0.4114 MVSFCSVISHSFHCVPLPTPNTSHFVRRNNPLRCQYPLSPHPSRFLRLPWGRESPSTRIRASITDVSVDVAVEIKRLPKGEAWSVHKFGGTCVGNSSRIKNVADIIINDDSERKLVVVSAMSKVTDMMYDLVHKAQSRDESYVSALDAVLEKHSSTAHDLLAGDDLATFLSQLHQDIGDLKAMLQAIYIAGHATESFTDFVVGHGELWSAQILSLVIKKNGTDCKWLDAREVLIVNPTRSDQVDPDYLESEQRLEKWYSRNPSKVIVATGFIASTPQNIPTTLKRDGSDFSAAIMGALFRARQVTIWTDVDGVYSADPRKVSDAVILKTLSYQEAWEMSYFGANVLHPRTIVPVIRYGIPIIIRNIFNLSTSGTKICHPSIIGDEDRQILKNYVKGFTTIDNLALVNVEGTGMAGLPGTASAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSVFHGALHAGRLSQVAIIPNCSILAAVGQKMASTPGVSATLFDALAKANINVRAVAQGCSEYNITVVVKREDSVKALRAVHSRFYLSRTTIAMGIIGPGLIGSTLLDQLSDQAAILKEEFNIDLRVMGIMGSKLMLLDDDTGINLDKWREVREEKGEVANLEKFVQHVHGNHFIPNTVLVDCTADSVIASNYDDWLRKGIHVITPNKKANSGPHYEYLRLRALQRQSYAHYFYEATVGAGLPIISTLRGLLETGDRILQIEGIFSGTLSYIFNNFKDGRVFSEVVAEARDAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVENLVPEPLRVSASAQEFMQQLPKFDQELTEKLKDAESAGEVLRYVGVVDVTNQKGVVKLRRYKKDHPFAQLSGSDNIIAFTTRRYKNQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1860 913 Gene3D - 83 378 IPR036393 -
Ssu9g1860 913 Pfam ACT domain 412 466 IPR002912 -
Ssu9g1860 913 Pfam Amino acid kinase family 84 365 IPR001048 -
Ssu9g1860 913 CDD ACT_AKi-HSDH-ThrA-like_1 403 482 - -
Ssu9g1860 913 SUPERFAMILY ACT-like 475 563 IPR045865 -
Ssu9g1860 913 SUPERFAMILY ACT-like 392 467 IPR045865 -
Ssu9g1860 913 Pfam Homoserine dehydrogenase 705 903 IPR001342 GO:0006520
Ssu9g1860 913 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 705 890 - -
Ssu9g1860 913 ProSiteProfiles ACT domain profile. 408 477 IPR002912 -
Ssu9g1860 913 CDD ACT_AKi-HSDH-ThrA_2 484 549 - -
Ssu9g1860 913 Gene3D - 390 549 - -
Ssu9g1860 913 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 552 727 IPR036291 -
Ssu9g1860 913 Pfam Homoserine dehydrogenase, NAD binding domain 560 697 IPR005106 GO:0016491|GO:0050661
Ssu9g1860 913 SUPERFAMILY Carbamate kinase-like 84 378 IPR036393 -
Ssu9g1860 913 PANTHER ASPARTOKINASE-HOMOSERINE DEHYDROGENASE 41 913 - -
Ssu9g1860 913 CDD AAK_AK-HSDH 83 377 IPR041743 -
Ssu9g1860 913 Gene3D - 555 905 - -
Ssu9g1860 913 PANTHER - 41 913 IPR011147 GO:0004072|GO:0004412|GO:0009067
Ssu9g1860 913 ProSitePatterns Homoserine dehydrogenase signature. 751 773 IPR019811 GO:0006520
Ssu9g1860 913 Gene3D Dihydrodipicolinate Reductase; domain 2 716 887 - -
Ssu9g1860 913 TIGRFAM asp_kinases: aspartate kinase 83 547 IPR001341 GO:0004072|GO:0008652
Ssu9g1860 913 ProSiteProfiles ACT domain profile. 489 566 IPR002912 -
Ssu9g1860 913 ProSitePatterns Aspartokinase signature. 85 93 IPR018042 GO:0004072|GO:0008652
Ssu9g1860 913 Pfam ACT domain 482 545 IPR027795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1860 Ssu-Chr9 55993711 56006773 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1860 K12524 - gmx:100812202 1495.33