Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1854 ATGGCTTCTACTCGCAATGAGTTTTATGCGCTTATGCTGGTGGGGTTGGCGGTTAGCTCCATGGTGGCTGCCTGTGGTGCTAACTTCTACCAAGACTTTGATCTAACGTGGGGTGATCACCGTGCTAAGATATTCAATGGAGGTCAGCTTCTATCTCTTTCGCTGGACAAAGTCTCCGGCTCTGGCTTCCAATCCAAGAAAGAGTACCTATTCGGGAGGATCGATATGCAGCTCAAGCTCGTTGCTGGCAACTCTGCCGGCACTGTCACTGCTTACTACTTGTCATCCCAAGGGCCAACTCATGACGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGTGACCCCTACATTCTCCACACAAATGTGTTTACCCAAGGCCAAGGGAACAGAGAGCAACAGTTCTACCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCTATCATCTGGAAGCCCCAGCACAttatATTCTTGGTCGATAACATTCCCATAAGGGTGTTCAAGAATGCTGAGTCTATTGGCGTTCCTTTCCCAAAGAACCAACCCATGAGAATCTATTCCAGCCTGTGGAATGCTGATGACTGGGCCACAAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAGGCACCCTTTACCGCCTACTAA 651 0.4869 MASTRNEFYALMLVGLAVSSMVAACGANFYQDFDLTWGDHRAKIFNGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1854 216 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Ssu9g1854 216 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 216 IPR013320 -
Ssu9g1854 216 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 216 IPR000757 GO:0004553|GO:0005975
Ssu9g1854 216 CDD GH16_XET 26 216 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu9g1854 216 ProSitePatterns Glycosyl hydrolases family 16 active sites. 103 113 IPR008263 GO:0004553|GO:0005975
Ssu9g1854 216 Gene3D - 15 216 - -
Ssu9g1854 216 PRINTS Glycosyl hydrolase family 16 signature 119 132 IPR008264 GO:0004553|GO:0005975
Ssu9g1854 216 PRINTS Glycosyl hydrolase family 16 signature 137 154 IPR008264 GO:0004553|GO:0005975
Ssu9g1854 216 PRINTS Glycosyl hydrolase family 16 signature 61 79 IPR008264 GO:0004553|GO:0005975
Ssu9g1854 216 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 9 216 IPR044791 GO:0004553
Ssu9g1854 216 Pfam Glycosyl hydrolases family 16 30 210 IPR000757 GO:0004553|GO:0005975
Ssu9g1854 216 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15 9 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1854 Ssu-Chr9 55900261 55901468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1854 16 216 Glycoside Hydrolase AT4G14130 83.582 1.28e-129 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1854 K08235 - gmx:100499905 430.254