Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1852 atggtgaACGCACTCACTCTCAGTCAGATTCACTTTGTGTTGGTGCTGAACCCCAATTGCAGAGGGCGCAAGAGTAGTAGCAACGGCGTCTTTCGAAAACCCTTTGCGAAATTCCCATCCCTCACCACTCATATTTGCCACGCCTCTTTTCACCCATTACCATCATTCGCCGACACAGTTTCGGACCCAAAGCACACAACGCTTCTGGTTGAGACTTACCATCTCCACGACAGCCTCAGAGCCTTACTTGCAAAGCTTGAGAAAGAAGATTCGCACCCTCTCCACATAATCGCCGAAGATGGAGATTGGTCCAAAGACCATTTTTGGGCCGTTGTCAGGTTCCTTAAAAATGCCTCAAGGTTTACCGAAATCCTTCAGGTGTTTGATACGTGGAAGAACATTGAGAAATCACGGATTAGTGAGTTCAACTATAACAAGATTATAGGCTTGTTATGTGAAGAAGGAATGATGGAAGGTGCGTTATCTGCATTGCAAGAGATGAAACTTCAAGGTATCAAGCCTTCTTTGGACACTTACAATCCAATAGTTCACGGATTATCCAGAGAAGGTAAGTTCAGTGATGCTTTACGTTTTTTTGATGAGATGAAAGAATCTGGCTTGGAGCCGGATACTGAAACGTATGATGGTTTGATTGGAGCCTACGGGAAATTTCAAATGTACGATGAGATGGGTGAGTGTGTGAAAAAGATGGTGTTGGATGGATGTTCTCCTGATCATATCACTTATAATATACTTATCCAAGAGTATGCTCGTGGTGGGCTACTCCAGAGAATGGAAAAACTATATCAAAGAATGTTTTCAAAAAGAATGCATTTGCAATCTTCTACTTTAGTTGCAATGCTAGAGGCTTATACCACATTTGGGATGGTTGAAAagatggaaaaattttacagaaAAGTCTTGAAATCAAAAACATGTCTAGAGGATGATTTGATTAGAAAATTGGCTGAATTTTATATCAAGAACTATATGTTTTCTAGATTAGAGGACCTGGCACTAGATTTATGTTCAGCATTTGGTGAGACCAACCTTGTATGGTGTCTCCGTCTCCTTTCTTATGCATGTCTTTTGAGTAAAAAAGGTATGGATATAGTTGTTCGAGAAATGCGAGATGCCAAGGTTAATTGGAATATTACTGTTGCAAATATTATCATGTTGGCTTATGTGAAGATGAAAGATTTCAGGCATTTGAGGATTTTGCTCTCTCAATTGCCAATCTATCGGGTACGGCCTGATATAGTCACTGTTGGAATTCTATTTGATGCCAATAGAATTGGTTTTGATGGTAGTGGAGCTTTAGAAACATGGAGGAGATTGGGCTATCTATACAAAGTAGTAGAAATGAAAACAGATTCTCTGGTCCTTACTGCATTTGGGAAAGGTCATTTTCTTAAAAGCTGTGAAGAAGTATACTCTTCCCTTCACCCTGAGGACAGAGAAAGGAAAACATGGACTTACTATGATCTCATTGCTTTATTGTCAAAACATACTGGTAGCATCGACTGTATGAAACCAAGATAG 1542 0.3949 MVNALTLSQIHFVLVLNPNCRGRKSSSNGVFRKPFAKFPSLTTHICHASFHPLPSFADTVSDPKHTTLLVETYHLHDSLRALLAKLEKEDSHPLHIIAEDGDWSKDHFWAVVRFLKNASRFTEILQVFDTWKNIEKSRISEFNYNKIIGLLCEEGMMEGALSALQEMKLQGIKPSLDTYNPIVHGLSREGKFSDALRFFDEMKESGLEPDTETYDGLIGAYGKFQMYDEMGECVKKMVLDGCSPDHITYNILIQEYARGGLLQRMEKLYQRMFSKRMHLQSSTLVAMLEAYTTFGMVEKMEKFYRKVLKSKTCLEDDLIRKLAEFYIKNYMFSRLEDLALDLCSAFGETNLVWCLRLLSYACLLSKKGMDIVVREMRDAKVNWNITVANIIMLAYVKMKDFRHLRILLSQLPIYRVRPDIVTVGILFDANRIGFDGSGALETWRRLGYLYKVVEMKTDSLVLTAFGKGHFLKSCEEVYSSLHPEDRERKTWTYYDLIALLSKHTGSIDCMKPR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1852 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Ssu9g1852 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Ssu9g1852 513 Pfam PPR repeat 240 272 IPR002885 -
Ssu9g1852 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Ssu9g1852 513 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 13 505 - -
Ssu9g1852 513 Pfam PPR repeat 144 172 IPR002885 -
Ssu9g1852 513 Gene3D Tetratricopeptide repeat domain 228 334 IPR011990 GO:0005515
Ssu9g1852 513 Gene3D Tetratricopeptide repeat domain 337 510 IPR011990 GO:0005515
Ssu9g1852 513 TIGRFAM PPR: pentatricopeptide repeat domain 213 245 IPR002885 -
Ssu9g1852 513 TIGRFAM PPR: pentatricopeptide repeat domain 144 175 IPR002885 -
Ssu9g1852 513 TIGRFAM PPR: pentatricopeptide repeat domain 247 276 IPR002885 -
Ssu9g1852 513 TIGRFAM PPR: pentatricopeptide repeat domain 178 211 IPR002885 -
Ssu9g1852 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Ssu9g1852 513 Gene3D Tetratricopeptide repeat domain 98 227 IPR011990 GO:0005515
Ssu9g1852 513 Pfam PPR repeat family 176 221 IPR002885 -
Ssu9g1852 513 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 13 505 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1852 120 446 Glycosyltransferase AT1G05670 22.892 4.54e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1852 - - gmx:100808924 902.123