Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1849 ATGGCGAGCCCAGATCCGGAGGGAGTCGACGGAGTCCGCATGACGTGGAACGTGTGGCCCCGCACGAAGGTGGAGGCGAGCAAGTGTGTGATCCCTCTGGCGGCGACGGTGGCGCTGATCCGGCCCCACCCGGACATCCCCCGCCTCCCCTACGCCCCTCTCCGCTGCAAGACCTGCTCCTCCGCCCTCAACCCCTTCTCGCGCGTGGACTTCACCGCCAAGATCTGGATCTGCCCCTTCTGCTACCAGCGCAACCACTTCCCCCCTCACTACCACGCCATCTCCGAGACCAACCTCCCCGGCGAGCTCTACCCCCAATACACCTACCGTCGAGTACACCCTCCCTCTCTCCAATCCCCTCAACCATCCCTCCCCCgttttcctcttcctcctcgaCACTTGTCTCATCGAGGAGGAGATCCAGTTCCTCAAGTCCGCGCTCCGTCGCGCCATTGA 456 0.6206 MASPDPEGVDGVRMTWNVWPRTKVEASKCVIPLAATVALIRPHPDIPRLPYAPLRCKTCSSALNPFSRVDFTAKIWICPFCYQRNHFPPHYHAISETNLPGELYPQYTYRRVHPPSLQSPQPSLPRFPLPPRHLSHRGGDPVPQVRAPSRH 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1849 151 SUPERFAMILY Zn-finger domain of Sec23/24 44 105 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Ssu9g1849 151 Gene3D - 50 108 - -
Ssu9g1849 151 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 131 - -
Ssu9g1849 151 MobiDBLite consensus disorder prediction 115 151 - -
Ssu9g1849 151 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 131 IPR037364 -
Ssu9g1849 151 Gene3D - 7 49 - -
Ssu9g1849 151 SUPERFAMILY beta-sandwich domain of Sec23/24 5 61 - -
Ssu9g1849 151 Pfam Sec23/Sec24 zinc finger 53 91 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1849 Ssu-Chr9 55837375 55837830 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1849 K14006 - gmx:100813940 237.269