Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1843 ATGAGGCACTTGGCTGTAGATGCTAGGCAAGAGATAGATTTGAAAGTTGGAGTTGCCTTTACTCGATTTCAAACAAGTTATTTCCAAGGAAAATATGGGAACCTAGATTCCAGAGTCATCTCCTATGGACCGTGTCAAACTCCTACCTTAGGATTTTGCGTGCAGCgatatttacaaataaacacTTTCAAGCCAGAAAAGTTTTGGAGTTTGCACCCTTACATAATTCAAAATGGCTATGAAATTCAGCTAGAGTGGCAACGTGGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAGCTGGTTTCCGAAGATGGACTTTTAGAAGTTACTGAAATATCAGAAAAACAGGAAACCAAAAGTCGCCCTGTTGGTCTAAACACAGTGAATCTTCTGAAGGTTGCTTCAAGTGCTCTAGGATTTGGACCTCAGATGGCTATGCAACTAGCTGAGCGGTTGTATACTCAAGGTTTCATCAGCTATCCACGCACTGAAAGCACAGCATACCCTCCTTCATTTGACTTTTGTGGTGTACTCTCTGCACAAACAAATAATCCAATATGGGGTAATTATGTACAAGGGCTACTTACCAGTGGTTATCAACAACCTCGATTGGGAACAGATGCAGGTGACCATCCTCCCATTACTCCTATGAGATCAGCAGCAGAAGATATGCTGGGCAATGATGCTTGGAAGCTGTACCAATATGTTTGTCAACACTTCATAGGGACAGTGTCTCCGGACTGCAAGTATATAAGGAGAAAGGTTGAATTTTCTATTGGCGGAGAGTCATTTCATTGTACAGGGCAGCATGTTGTCACCAACGGATTTACTGCTATTATGCCTGGTTGgctataa 864 0.4086 MRHLAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQNGYEIQLEWQRGKLFDINVAMMFQKLVSEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFCGVLSAQTNNPIWGNYVQGLLTSGYQQPRLGTDAGDHPPITPMRSAAEDMLGNDAWKLYQYVCQHFIGTVSPDCKYIRRKVEFSIGGESFHCTGQHVVTNGFTAIMPGWL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1843 287 PANTHER DNA TOPOISOMERASE 3-BETA-1 4 284 - -
Ssu9g1843 287 Gene3D Topoisomerase I, domain 4 124 249 IPR013826 -
Ssu9g1843 287 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 153 167 IPR023406 GO:0003917
Ssu9g1843 287 PANTHER PROKARYOTIC DNA TOPOISOMERASE 4 284 IPR000380 GO:0003677|GO:0003917|GO:0006265
Ssu9g1843 287 SMART topIban2 2 70 IPR003601 GO:0003677|GO:0003916|GO:0006265
Ssu9g1843 287 SMART topIaneu2 116 285 IPR003602 GO:0003677|GO:0003916|GO:0006265
Ssu9g1843 287 Pfam DNA topoisomerase 5 283 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ssu9g1843 287 Gene3D Topoisomerase I, domain 2 3 87 IPR013824 -
Ssu9g1843 287 PRINTS Prokaryotic DNA topoisomerase I signature 235 251 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ssu9g1843 287 PRINTS Prokaryotic DNA topoisomerase I signature 158 167 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ssu9g1843 287 PRINTS Prokaryotic DNA topoisomerase I signature 40 58 IPR013497 GO:0003677|GO:0003916|GO:0006265
Ssu9g1843 287 SUPERFAMILY Prokaryotic type I DNA topoisomerase 4 284 IPR023405 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1843 Ssu-Chr9 55795770 55799083 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1843 K03165 - gmx:100791807 570.466