Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1824 ATGTCTCAGGTTGATAACAGAAATTCCTCAGCTGCTAAGCGTGCTAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCCGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTGCAAGCTCATCAGGGTTATTCATCCTCAGCACCTTATATAGGTTCTAATACTCCCTCTTCAATATATCTTGGTGTCACGCCATATGGGTCTTCTCTGTTCAATGGATCATCTATTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGTAGTCGCCTTTCTGCTGGCAGTCCTTATAGACCATTGCATTTATCTGGACCTACACCCTACACCAGTGGATCAATGATAGGAAATGGTGGAATCTATGGCATGCCCCAACTGCTGGATCGGTATGGCCTGGGTGTGCCTATTGGACCTGGGACAATGGGTGCTAGGCCAGGATTTTTTCGTGATGACAAGTCTCAGAGAAAGGGTGCAGATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTCTCATTCAGAACTGTCTGCAACATGAGAAAGTGTAACACACCCAAACCTGGATCCCAGGCCTCAAAATCTGACAAAAATTCTAAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGTGAAAAGTGTAATAACATAAACTATCCGTTCAGAATCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCTGATTCAGAAAAATCTTCTTCACCAGCTGCAGATCAAAGTGATCAGGTTTGTTGTGTAaaatatcttcattttttaagcCTTCATTCCTTGTTGCAACAGTTGTTGGTTTTCCAACAGCAGCTTTGTAACATAATGAACATTTTCATATGGCAAGCTGTTGTGAAGTTGCCTTTTAAGTGGATTCTAAGGAAAAGCTTCTGTTTTCCTTCCTTTCATTTGGAATCTTTTATTACATctttttaa 1053 0.4207 MSQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAHQGYSSSAPYIGSNTPSSIYLGVTPYGSSLFNGSSIPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPTPYTSGSMIGNGGIYGMPQLLDRYGLGVPIGPGTMGARPGFFRDDKSQRKGADATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRIKCNRQNCGADKPADSEKSSSPAADQSDQVCCVKYLHFLSLHSLLQQLLVFQQQLCNIMNIFIWQAVVKLPFKWILRKSFCFPSFHLESFITSF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1824 350 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Ssu9g1824 350 MobiDBLite consensus disorder prediction 1 25 - -
Ssu9g1824 350 PANTHER OS08G0521400 PROTEIN 5 316 - -
Ssu9g1824 350 MobiDBLite consensus disorder prediction 220 242 - -
Ssu9g1824 350 Gene3D - 228 271 - -
Ssu9g1824 350 Gene3D - 189 225 - -
Ssu9g1824 350 Gene3D - 14 54 - -
Ssu9g1824 350 MobiDBLite consensus disorder prediction 179 193 - -
Ssu9g1824 350 MobiDBLite consensus disorder prediction 11 25 - -
Ssu9g1824 350 SUPERFAMILY Ran binding protein zinc finger-like 188 225 IPR036443 -
Ssu9g1824 350 SUPERFAMILY Ran binding protein zinc finger-like 233 271 IPR036443 -
Ssu9g1824 350 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Ssu9g1824 350 Pfam Zn-finger in Ran binding protein and others 194 223 IPR001876 -
Ssu9g1824 350 Pfam Zn-finger in Ran binding protein and others 239 269 IPR001876 -
Ssu9g1824 350 PANTHER ZINC FINGER PROTEIN 5 316 - -
Ssu9g1824 350 MobiDBLite consensus disorder prediction 174 193 - -
Ssu9g1824 350 SMART zf_4 24 50 IPR001876 -
Ssu9g1824 350 SMART zf_4 195 221 IPR001876 -
Ssu9g1824 350 SMART zf_4 241 267 IPR001876 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1824 155 278 EF-hand Containing Proteins AT1G55040 30.645 1.09e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1824 - - gmx:100796535 579.711