Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1814 ATGCAAACTAAGAGGAAAACCTCCAGGCGAAATGCTGGTCAAGAGTGTGGCAGTCCTAGGATTTCAAGAGCACAGAGGAAGGGCTCTGAAAATGGACGAGCAGTTGAAAAGAAAGTCTCAGACTTAATTACATCATCTGCTAGAAAGAATAAATCTTTTAGCACTATTGAGAATAAAGCTGGAGAGCCCATCCCCTCAACAGATTTGAATAATGGATATCAGTTTATGGACAGTGGGACTTCTAATGCTTGTTTGGAAAATGATGCAGTTGATGATGTTTCTTTAGATTTTATGGGCTGCAACAATCAAGCTGTTCATCTGGAGTCTGGAACTATATTTTCCCCTGGGTTTCACTTGTCCAAAAATTCCGGAGGGAAAGTTGTTGACAGAGttgattttgtcaaaatttttcaGAAACAAGAAATAGAGTTACCACAGGAAGATGCAGTAGATGGTCATGTTAGTCAAGACTCTGACACTGCAATGGAGGTAGACATAAACAATTCATCCAACTACTCTAATTCAGGGAGATGTGGCAATCAGATGCTTGCTTTAAGCACAAAAAATGTGAATGGTTGCAATTCTGATTTTGATGGAAACAGTCTTTCCTTGGAAGTTTCTGCCATATATTTTGCCATGAAAAACTCAAAGCTAGAATGTGTCGATGAGCAGAGTCAGGATCCCATGTCTTCTGAAATATGCACTGAGGCGGATGATTTTGAGGATTTTGATGACTTTGACCCATACTTATTCATAAAGACCTTACCAGACTTGTCAACGGTGGTTCCAACTTTTAGACAATTATTGCTACCTAAACAGACACGGAGTTGCCCTCCTACTACTCTTGTCCTGGACTTGGATGAAACTTTGGTGCATTCTACCCTTGAACCTTGTGAGGATGTAGACTTCACTTTTcctgttaatttcaattgtgaGGAGCACATTGTCTATGTACGCTGCCGCCCTCACCTCAAAGATTTCCTAGAGAGAGTTTCTGgtctttttgagattattatatttacagCTAGTCAAAGTATTTATGCTGAGCAACTTCTAAATGTGCTTGATCCAAAGCGGAAGATATTTCGCCACCGTGTATATCGTGAATCCTGTGTTTATGTGGAGGGGAATTACCTCAAAGATTTAACAGTGCTTGGTCGTGATCTGGCACGTGTTATAATAATTGACAATTCCCCACAGGCATTTGGATTCCAAGTGGATAATGGAATACCGATTGAGAGTTGGTTTGATGATCGTTCTGATCAAGAATTGCTTTTATTACTTCCGTTTCTGGAGAGCTTGGTTGGTGTTGATGATGTCCGTCCACTAATTGCAAAGAAATTCAACCTGCGAGAGAAAATTGCTGCAGCTGCGCATCCTCTAAATACAAATCGAAGAGATTTCTTATCAGAATGA 1416 0.3891 MQTKRKTSRRNAGQECGSPRISRAQRKGSENGRAVEKKVSDLITSSARKNKSFSTIENKAGEPIPSTDLNNGYQFMDSGTSNACLENDAVDDVSLDFMGCNNQAVHLESGTIFSPGFHLSKNSGGKVVDRVDFVKIFQKQEIELPQEDAVDGHVSQDSDTAMEVDINNSSNYSNSGRCGNQMLALSTKNVNGCNSDFDGNSLSLEVSAIYFAMKNSKLECVDEQSQDPMSSEICTEADDFEDFDDFDPYLFIKTLPDLSTVVPTFRQLLLPKQTRSCPPTTLVLDLDETLVHSTLEPCEDVDFTFPVNFNCEEHIVYVRCRPHLKDFLERVSGLFEIIIFTASQSIYAEQLLNVLDPKRKIFRHRVYRESCVYVEGNYLKDLTVLGRDLARVIIIDNSPQAFGFQVDNGIPIESWFDDRSDQELLLLLPFLESLVGVDDVRPLIAKKFNLREKIAAAAHPLNTNRRDFLSE 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1814 471 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 1 458 - -
Ssu9g1814 471 TIGRFAM HIF-SF_euk: dullard-like phosphatase domain 280 443 IPR011948 GO:0016791
Ssu9g1814 471 Pfam NLI interacting factor-like phosphatase 281 441 IPR004274 -
Ssu9g1814 471 MobiDBLite consensus disorder prediction 51 70 - -
Ssu9g1814 471 PANTHER INTERACTING FACTOR, PUTATIVE, EXPRESSED-RELATED 1 458 - -
Ssu9g1814 471 MobiDBLite consensus disorder prediction 1 43 - -
Ssu9g1814 471 Gene3D - 265 449 IPR023214 -
Ssu9g1814 471 SMART forpap2 278 422 IPR004274 -
Ssu9g1814 471 CDD HAD_FCP1-like 281 412 - -
Ssu9g1814 471 ProSiteProfiles FCP1 homology domain profile. 275 434 IPR004274 -
Ssu9g1814 471 SUPERFAMILY HAD-like 268 445 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1814 Ssu-Chr9 55487305 55490599 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1814 K17616 K12778 gmx:100804307 841.647