Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1806 ATGTCGTTTGCATCGTCATTCTCGATGCTCCGGCAGCGCGCGGTGGCCTCCGCCGCCCCTGTCCTTCTCCGCCGCTTCCGGTGCGTCCCAATCGCCGGCAGACAGCAGAACCCTAACAAGCAGCACCAGCAAGCCGCCCCGAGCCGGAACCTCCTGAAGGCGAAGCGGACGCTGAAGGAGTTCTCCTCCCTGGCCCCCGTCCTCTCCGTCGACGACAGCCCCCCTCTCTCGGAGTCCCAGGCCATCGGCGTCGTGGCGGCGTCGCAGGCCAACTTCATGCGCGTCATCGTCCCCGAGGAACACCCTTCTTCTGGAACCTTCCGCGGCGTGGAGCTCCTCTGCGTCGTGAGGGCGCTCCTCAAGAAGATCAAGCGCAGGGTCATGGTCGGGGACCAGGTTCTCGTGGGTTCCATCGACTGGGTCGACCGCAGGGGCATGATCGAGAACGTGTTCCACCGAACCTCCGAGATTCTCGACCCCCCCGTCGCCAACGTCGACCACTTGCTCGTGCTGTTCTCGCTCGAACAACCCAGGCCCGAACCCTTCACCCTCACGCGCTTCCTCGTCGAGGCTGAATCCACTGGGATCCCTCTCACGCTGGCACTCAACAAGACGGAGCTTGTGGACAAAGAGATTGTGGGTTCGTGGAAGGCTAGGTTGCGCGGCTGGGGGTATGAGCCGATTTTTTGTAGTGTTGAATCTGGACATGGGCTTGATCTTCTTGCGTTCAAGTTGAGGGACCAAACGACGGTGATTGTGGGGCCTAGTGGAGTTGGGAAGTCGAGTTTGATCAATGCCCTTAGAAGCAATCCTTCCAATGCTGCCGAAGGGGAGAATTGGTTTGAGCCTATTTTGGGAAGCAAGTGGCTTGAGAATCAGCGAGTTGGGGAGGTTTCAACGAGAAGCGGTAGAGGGAAGCATACTACTCGCCATGTCTCTCTGCTTCCATTGTCTGAAGGGGGTTTTCTTGCTGATACTCCTGGATTTAACCAGCCTAGTTTATTGAAAGTGACAAAGCAGTCTCTGGCACAGACTTTTCCTGAAATCAGGAAAATGCTTAGTGCCAATGAGCATGAGAAATGTGCATTTAACAATTGCTTGCATCTGGGTGAACCTGGATGCATTGTGAAGGGAGATTGGGAAAGATATTCATTCTATTTTCAACTTGTTGATGAAATCAGAATCAGGGAGGAATTTCAGTTGAGGACATTTGGAACTAAAAGAGAAGGTGATGTAAGgttGAAAATGGGAGACATGGGTGTTCAGCAAGCAGAACCACGGTTGGAACCTAAGAAGCATAGAAGACAATCTCGGAAGAGGATTAACCAGTCAATTTTAGATGAATTGGATGATGACGACAATTTGCTTGATGAGGAAAATGATCCCATTTTAAGGGCGCTACGGAATGAAAACTCTTAG 1419 0.5328 MSFASSFSMLRQRAVASAAPVLLRRFRCVPIAGRQQNPNKQHQQAAPSRNLLKAKRTLKEFSSLAPVLSVDDSPPLSESQAIGVVAASQANFMRVIVPEEHPSSGTFRGVELLCVVRALLKKIKRRVMVGDQVLVGSIDWVDRRGMIENVFHRTSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKTELVDKEIVGSWKARLRGWGYEPIFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINALRSNPSNAAEGENWFEPILGSKWLENQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANEHEKCAFNNCLHLGEPGCIVKGDWERYSFYFQLVDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDDDDNLLDEENDPILRALRNENS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1806 472 ProSiteProfiles EngC GTPase domain profile. 163 330 IPR010914 GO:0003924|GO:0005525
Ssu9g1806 472 SUPERFAMILY Nucleic acid-binding proteins 81 153 IPR012340 -
Ssu9g1806 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 391 IPR027417 -
Ssu9g1806 472 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 81 397 IPR004881 GO:0003924|GO:0005525
Ssu9g1806 472 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 71 454 - -
Ssu9g1806 472 Pfam RsgA GTPase 150 334 IPR010914 GO:0003924|GO:0005525
Ssu9g1806 472 Gene3D - 76 151 IPR012340 -
Ssu9g1806 472 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 154 332 IPR030378 GO:0005525
Ssu9g1806 472 CDD YjeQ_EngC 163 391 IPR004881 GO:0003924|GO:0005525
Ssu9g1806 472 Gene3D - 152 334 IPR027417 -
Ssu9g1806 472 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 127 271 IPR004881 GO:0003924|GO:0005525
Ssu9g1806 472 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 71 454 IPR004881 GO:0003924|GO:0005525
Ssu9g1806 472 MobiDBLite consensus disorder prediction 418 443 - -
Ssu9g1806 472 Gene3D Probable gtpase engc; domain 3 336 398 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1806 K06949 - gmx:100796145 832.017