Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1804 ATGTTTGGCGGCGCTCAACCTTCTTCGTCTCCCTACGGAACCCCTTCTTCAACCCCAGCATTCGGTACCCCTTCCTTCGGTACCCCATCTTCTGCGCCAGCCTTCGGTTCTGCCCTCTTCTCCACACCCTTTTcttctcaaccacaaccacaacaacagaCTCCACTGTTTCAACAACAACCAGCTTCTTCTGCTTTCGGCTTTCAAAATTCCCTTGCAGCACCGCAACCCTCGCCCTTCGCAAATGCCCAATTAACCACTCAGATGGCTAACGTAGCACCCGTTCCTTTCTCCCTCGCCGATCGCGATGTTCAAACAATCGTCGATGCTTATAAGGAAGATCCTGGAAACCCCAAGTACGCTTTTAAGCATTTGTTGTTCAGTGTAACAGACCCGCAGTTTAGAGTGAAGCCTGCTGGTATATCAGACATCATGTGGGCGGAGGCAATGGGGAAGCTTGAAGGTATGGAAAGTGCTGATAGAGAACGTCTGTGGCCACAGCTCGTTCAGGGTTTTAAGGATCTTTCACAACGCCTTAAGATACAAGATGAAGTCATTGTTTCTGATGCAGAGAGATTGCGTATAACCCAAAGCAATGTTAAAATGCTCCAAAGACATTTTCAAGCTGATACTCTTCCTTGGATTCAAAGGCTGaaacaaaaagaacaaattcTGCAGCAACGTCTTTTAAGAGTAATGAGAACAGTGGAAGCGTTGGAAGGAAAAGGCTGCCGTATACCCTTAACAAAAGGGGAAGCTGAACTTGCTGAGAAATTAGCCACAATAACTAGACAGCTGAAAGGATCTGGGGCGGAACTGTCTAGAAGGGTACAAAATCTACTAACTGTATCTCGTGTTAAGGCTAATAGCAATGGATTTGGTGGCTCCGTTTATCTTCCGGGGTCAACCAAAATTCATGAACAGAGTCTTGCTGACCTACAGGAGGTTTTACAGCAGCAGATGGAGGCCATTGCAAGACTTGGCGGTGTTTTGAAGCGAGATATACGGGATATGGAGATTATGATGACTGAGGACACAGGAACAGCTGAAAATGGGAATTTAATCTGA 1068 0.4485 MFGGAQPSSSPYGTPSSTPAFGTPSFGTPSSAPAFGSALFSTPFSSQPQPQQQTPLFQQQPASSAFGFQNSLAAPQPSPFANAQLTTQMANVAPVPFSLADRDVQTIVDAYKEDPGNPKYAFKHLLFSVTDPQFRVKPAGISDIMWAEAMGKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVIVSDAERLRITQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRLLRVMRTVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGAELSRRVQNLLTVSRVKANSNGFGGSVYLPGSTKIHEQSLADLQEVLQQQMEAIARLGGVLKRDIRDMEIMMTEDTGTAENGNLI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1804 355 PANTHER NUCLEOPORIN P54 2 347 IPR024864 GO:0005643
Ssu9g1804 355 PANTHER NUCLEOPORIN P54 2 347 - -
Ssu9g1804 355 Coils Coil 215 235 - -
Ssu9g1804 355 MobiDBLite consensus disorder prediction 7 61 - -
Ssu9g1804 355 Pfam Nucleoporin complex subunit 54 137 281 IPR025712 -
Ssu9g1804 355 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1804 Ssu-Chr9 55359852 55363610 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1804 K14308 - gmx:100797030 597.045