Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1800 ATGATACCAATTGTTGAAGCCACCTTTCGTGATGGGACTAAGTTAGTCACCATTCATGACCCAGTTGATTGCGAGAATGGAAACCTTGAACTAGCATTATTTGGTTCTTTTCTTCCAGTACCTTCACTTGACAAATTTACTGAGAACGAAGAAGATCATAGAACTCCAGGTGAAATAATATTTGCAGGTGGAAATCTGGTTCTTAACCCCGGAAGGAAAGCAATAATTCTCAAAGTTGTCAACAATGGAGACAGGCCAATTCAGGTTGGCAGCCACTATCATTTTATTGAACTAAATCCTTACTTAACCTATGATCGAAGGAAAGCATATGGCATGCGCCTCAATATAGCTGCTGGGAATGCCACACGCTTTGAGCCAGGGGAAAGTAAAAGTGTTGTACTTGTAAGCATTGGAGGTAACAAAGTCATCAGAGGAGGTAACAACATTGCTGATGGTCCAGTTAATGATTCAAATTGCATAGCAGCCATGGAGGCTGTGATCACAGGGGGATTTGGACATGTGGAAGAGGAAAATGCTAGGGAAGGTGTTACTGGAGAAGACTGTTCATTAACTACAGTAATTTCTCGAGAGGAATATGCTAACAAGTATGGCCCTACAACTGGTGACAAAATCCGTCTTGGTGATACTGACTTGTTTGCcgaaattgaaaaagatttcGCTGTCTATGGTGATGAATGTGTTTTTGGAGGTGGGAAAGTCATAAGAGATGGAATGGGTCAATCATGTGGCCATCTACCTGAGGACTCCTTGGATACTGTTATAACAAATGCTGTGATCATTGATTATAGTGGAATTATCAAAGCAGATATTGGTATTAAAGATGGCCTCATTATCTCGATTGGAAAAGCAGGAAATCCTGACATTATGAATGGTGTATGTCATAATATGGTAATTGGGGCTAATACTGAAGTTATTGCTGGAGAGGGCATGATTGTGACAGCTGGGGCTATAGATTGTCATGTGCATTTTATATGCCCTCAATTAGTATATGATGCCGTAACAAGTGGTATCACAACATTAGTGGGAGGAGGAACAGGACCAGCTGATGGAACACGTGCTACAACTTGTACACCGGCACCAAATCAGATGAAATTAATGCTACAATCAACAGATGACATGCCTTTAAACTTTGGTTTCACTGGAAaaGGGAATAGTGCCAAACCTGATGAACTGCACGAAATAATCAGGGCTGGAGCTATGGGACTGAAGCTGCATGAGGACTGGGGAACTACACCGGCTGCAATAGACAGCTGTTTGACTGTTGCAGAACAATATGATATCCAGGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATTCAATTGCTGCATTTAAAGGAAGAACTATTCATACTTACCACAGTGAAGGTGCAGGTGGTGGCCATGCTCCAGATATCATAAAAGTATGTGGTGAGAAGAATGTCCTGCCCTCATCAACAAATCCCACACGCCCTTATACATCTAACACCATAGATGAGCATCTTGACATGTTGATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCAGAATCAAGAATAAGAGCTGAAACAATTGCTGCTGAAGATATTTTGCACGATATGGGGGCAATTAGCATTATATCTTCTGATTCACAGGCTATGGGTCGAATTGGAGAGGTGATAAGCAGAACTTGGCAAACTGCCGATAAGATGAAGTCGCAGAGAGGACCACTGCAGCCGGGTGAAGACAATGACAACTTTCGGATCAAACGTTATGTTGCAAAGTATACCATAAACCCAGCTATAGCGAATGGTTTGTCGCAATATATTGGTTCAGTCGAGCTGGGAAAGTTAGCTGATCTTGTATTATGGAAGCCGTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCTTATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCAGAACCGGTGATTATGAGGCCAATGTTCGGAGCATTTGGCAAGGCTGGTAGTGCACACTCCATTGCTTTTTTGAGCAAGGCAGCTTTGGACGATGGGGTAAAAGCTTCGTACGGACTTAACAAAAGGGTGGAAGCTGTGGAGAATGTAAGGAAGCTCACCAAACTAGACATGAAACTGAATGATGCTCTTCCAGAAATCACTGTGGACCCAGAAACATACACAGTTACAGCAGATGGAGAGGTTCTCACCTGCACCGCAGTCACCACTGTTCCTCTTTCTCAAAATTACTTCCTCTTTTAA 2280 0.4202 MIPIVEATFRDGTKLVTIHDPVDCENGNLELALFGSFLPVPSLDKFTENEEDHRTPGEIIFAGGNLVLNPGRKAIILKVVNNGDRPIQVGSHYHFIELNPYLTYDRRKAYGMRLNIAAGNATRFEPGESKSVVLVSIGGNKVIRGGNNIADGPVNDSNCIAAMEAVITGGFGHVEEENAREGVTGEDCSLTTVISREEYANKYGPTTGDKIRLGDTDLFAEIEKDFAVYGDECVFGGGKVIRDGMGQSCGHLPEDSLDTVITNAVIIDYSGIIKADIGIKDGLIISIGKAGNPDIMNGVCHNMVIGANTEVIAGEGMIVTAGAIDCHVHFICPQLVYDAVTSGITTLVGGGTGPADGTRATTCTPAPNQMKLMLQSTDDMPLNFGFTGKGNSAKPDELHEIIRAGAMGLKLHEDWGTTPAAIDSCLTVAEQYDIQVNIHTDTLNESGFVEHSIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGEKNVLPSSTNPTRPYTSNTIDEHLDMLMVCHHLNKNIPEDVAFAESRIRAETIAAEDILHDMGAISIISSDSQAMGRIGEVISRTWQTADKMKSQRGPLQPGEDNDNFRIKRYVAKYTINPAIANGLSQYIGSVELGKLADLVLWKPSFFGAKPEMVIKGGEVAYANMGDPNASIPTPEPVIMRPMFGAFGKAGSAHSIAFLSKAALDDGVKASYGLNKRVEAVENVRKLTKLDMKLNDALPEITVDPETYTVTADGEVLTCTAVTTVPLSQNYFLF 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1800 759 CDD Urease_beta 55 154 IPR002019 GO:0035550|GO:0043419
Ssu9g1800 759 SUPERFAMILY Urease, beta-subunit 55 184 IPR036461 -
Ssu9g1800 759 TIGRFAM urease_alph: urease, alpha subunit 194 759 IPR005848 GO:0006807|GO:0009039|GO:0016151
Ssu9g1800 759 Gene3D Urease, beta subunit 72 191 IPR036461 -
Ssu9g1800 759 SUPERFAMILY Metallo-dependent hydrolases 322 759 IPR032466 -
Ssu9g1800 759 PRINTS Urea amidohydrolase (urease) protein signature 619 632 IPR005848 GO:0006807|GO:0009039|GO:0016151
Ssu9g1800 759 PRINTS Urea amidohydrolase (urease) protein signature 593 608 IPR005848 GO:0006807|GO:0009039|GO:0016151
Ssu9g1800 759 PRINTS Urea amidohydrolase (urease) protein signature 488 505 IPR005848 GO:0006807|GO:0009039|GO:0016151
Ssu9g1800 759 PRINTS Urea amidohydrolase (urease) protein signature 527 543 IPR005848 GO:0006807|GO:0009039|GO:0016151
Ssu9g1800 759 ProSiteProfiles Urease domain profile. 322 759 IPR017951 GO:0006807|GO:0009039|GO:0016151
Ssu9g1800 759 ProSitePatterns Urease active site. 510 526 IPR017950 GO:0009039
Ssu9g1800 759 Gene3D Urease, subunit C, domain 1 192 672 IPR011059 GO:0016810
Ssu9g1800 759 CDD Urease_alpha 194 758 IPR005848 GO:0006807|GO:0009039|GO:0016151
Ssu9g1800 759 Hamap Urease subunit alpha [ureC]. 192 759 IPR005848 GO:0006807|GO:0009039|GO:0016151
Ssu9g1800 759 TIGRFAM urease_beta: urease, beta subunit 55 155 IPR002019 GO:0035550|GO:0043419
Ssu9g1800 759 SUPERFAMILY Composite domain of metallo-dependent hydrolases 601 671 IPR011059 GO:0016810
Ssu9g1800 759 Pfam Amidohydrolase family 318 642 IPR006680 GO:0016787
Ssu9g1800 759 Pfam Urease beta subunit 56 152 IPR002019 GO:0035550|GO:0043419
Ssu9g1800 759 Pfam Urease subunit beta-alpha linker domain 154 187 IPR040881 -
Ssu9g1800 759 PANTHER UREASE 5 759 - -
Ssu9g1800 759 Pfam Urease alpha-subunit, N-terminal domain 194 312 IPR011612 -
Ssu9g1800 759 Gene3D - 3 46 IPR036463 GO:0016151|GO:0043419
Ssu9g1800 759 SUPERFAMILY Urease, gamma-subunit 5 26 IPR036463 GO:0016151|GO:0043419
Ssu9g1800 759 ProSitePatterns Urease nickel ligands signature. 320 333 IPR029754 GO:0016151
Ssu9g1800 759 Gene3D - 322 740 - -
Ssu9g1800 759 SUPERFAMILY Composite domain of metallo-dependent hydrolases 193 370 IPR011059 GO:0016810
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1800 Ssu-Chr9 55288765 55296338 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1800 K01427 - gmx:547672 1425.61