Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1780 ATGTTCAAACAGATATTCAGTAAACTCCCTCGAAAGTCATCGAAAGGTTCGGAACACGGTGGAAGTGGAAGAAGCCATGGCGTTACCACTTCGAAGAACAGCAGTGATTCTGTTAGTGTTACCCCAGGTGGCACCAAACCCGGGAATTCTTCTTCTGCGGGACAGAATCATGGTAACAGAGTTCCGTTACCGTTGGTTGTGAATGAGAACAACATTAACAACCCCAATAATGGGAATTTCGGTTCCTATGAGGCATTGCCTGCGTTCAGGGATGTTCCCTCTTCTGAGAAGCCAACCTTGTTCATCAAGAAGCTTAGGATGTGCAGTGTGGTGTTTGACTTCACTGACCCCGCCAAGCACCTCAAGGAGAAGGAGATTAAGAGACAGACCTTGGTGGAACTCGTGGATTATGTGACCTCTGCGAATGCTAAGTTTGCGGAGAATGTGATGCAGGAGGTTGTGAAAATGGTGTCTGCGAATATATTTAGGACTCTTAGTCCTCAGCCGCGCGAGAACAAGATTGTTGATGGTGTTGACGTGGAGGAGGAGGAGCCTTCGATGGATCCTGCTTGGCCTCATTTACAGATTGTGTATGAGCTTTTTCTGAGGTTTGTGGCATCACCTGAGCTGGATGCAAAGTTGGCCAAGAGATATGTTGATCAGTCCTTCGTTTTGAAGCTGCTGGATTTGTTTGACTCTGAAGATCCAAGAGAGAGGGAGTACTTGAAGATGACTCTGCACCGCATCTATGGCAAATTCATGGCGCATCGCCCTTTCATCAGGAAGGCCGTCAATAAtaccttttataattttatttttgagactGAGAAGCATAATGGGATTGCGGAGTTCTTGGAAATTCTTGGGAGCATCATTAATGGTTTTGCACTGCCGTTGAAGGAAGAGCATAAACTGTTTCTTGTTCGTATACTGATTCCACTGCACAAGCCAAAGTGCTTGGCAATGTATCATCAGCAGTTGTCTTATTGCATTACCCAATTTGTGGAGAAAGACTGCAAGCTTGCTGATACAATTATTAGGGGATTATTGAAGTACTGGCCTATAACAAATAGTTCAAAGGAAGTTATGTTCCTGGGTGAGTTGGAAGAAGTCTTAGAAGCAACTCAACCCCCAGAATTTCAGCGTTGTATGGTGCCATTATTTCGCCGCATTGCACGTTGTTTGAATAGCCCTCATTTTCAGGTGGCCGAAAGAGCTTTGTTCTTGTGGAACAATGATCACATCATGAACTTAGTCAAACAAAACCGAAAAGTGATACTGCCCATCATCTTCCCTGCATTGGAGAGAAATGCTAGAAGTCATTGGAACCAAGCTGTCCATAGTTTGACTTTAAATGTGCGGAAGATTTTTAATGATGTCGACGCTGATCTATCTAAAGAATGTTTACAAAAGTTTGAGGAAAATGAGTCAAAGGAAAGTGAAGTCATAGCAGGGCGTGAAGCCACATGGAAACGCTTGGAGGAGCTTGCCGCAAAGAAAGCTGCAAGTGGCGAAGCAGTGCTTATTGCTAAAGCACCAACTCGCAGCTCTGCAGGTTAG 1560 0.4417 MFKQIFSKLPRKSSKGSEHGGSGRSHGVTTSKNSSDSVSVTPGGTKPGNSSSAGQNHGNRVPLPLVVNENNINNPNNGNFGSYEALPAFRDVPSSEKPTLFIKKLRMCSVVFDFTDPAKHLKEKEIKRQTLVELVDYVTSANAKFAENVMQEVVKMVSANIFRTLSPQPRENKIVDGVDVEEEEPSMDPAWPHLQIVYELFLRFVASPELDAKLAKRYVDQSFVLKLLDLFDSEDPREREYLKMTLHRIYGKFMAHRPFIRKAVNNTFYNFIFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQRCMVPLFRRIARCLNSPHFQVAERALFLWNNDHIMNLVKQNRKVILPIIFPALERNARSHWNQAVHSLTLNVRKIFNDVDADLSKECLQKFEENESKESEVIAGREATWKRLEELAAKKAASGEAVLIAKAPTRSSAG 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1780 519 MobiDBLite consensus disorder prediction 1 67 - -
Ssu9g1780 519 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 517 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu9g1780 519 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 517 - -
Ssu9g1780 519 MobiDBLite consensus disorder prediction 23 58 - -
Ssu9g1780 519 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 86 497 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu9g1780 519 SUPERFAMILY ARM repeat 99 479 IPR016024 -
Ssu9g1780 519 PIRSF PP2A_B56 2 518 IPR002554 GO:0000159|GO:0007165|GO:0019888
Ssu9g1780 519 Gene3D - 93 496 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1780 Ssu-Chr9 55095712 55105379 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1780 K11584 - gmx:100811438 937.562