Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1760 ATGCTGGCTTTGTTTTTTATGTGCATGTTACAGGCAACATGCTCCTTCTTCAGGCAGCCAGCAAACTTTGCTCCGGATTTGGACTTGTCCTTGTCCGAGCTTGCTGCACTCGACATGTGCCAGAAGAGAGCCATCTTCAAGCCAATGACAACTGAACAACGCCAAGATTTGAAGCTAAGGTGTGGAGGCTCTTGGAAACTGGTGCTGAGGTATTTGATGGCTGGAGAGGCATGTTGCAGGAGGGAGAAGTCACAGGCAATAGCAGGTCCTGGTCACAGCATTGCTGTGACAGGTAAAGGGGTTGTTTATTCATTTGGGTCCAACAGTTCAGGACAACTCGGACATGGCACCACTGAAGAGGAATCGCGACCTCAACCAATAAGAACTTTGCAAGGCATTCGAATTATACAAGCTGCTGCTGGGGCTGGGAGGACAATGTTGGTCAGTGATTCTGGGCAGGTATATGCATTTGGGAAAGACTCATTTGGGGAAGCTGAGTATGGAGGTCAAGGTTCTAAAACGGTTACAGCTCCACAGTTAGTGGAGTctttgaaaaacatatttgttGTCCAAGCTGCAATTGGTAATTTTTTCACAGCTGTGTTGTCAAGAGAAGGCAGGGTTTATACATTTTCTTGGGGTAGTGATGGCAAACTTGGTCACCACACTGATCCAAGTGATGTGGAACCCCGTCCTTTATTAGGTGCTCTTGAAGACATACCAGTAGTGCAAATTGCTGCTGGATATTGCTACCTGCTTTGTCTGGCTTGTCAACCCAGCGGAATGTCAGTATATTCTGTTGGGTGTGGCTTGGGGGGCAAGCTTGGACACGGCTCAAGAACTGATGAAAAGTACCCTCGTTTAATCGAACAGTTCGGGCTGCTGAACCTCCAACCCATGGTTGTTGCAGCTGGTGCTTGGCATGCTGCTGTGGTGGGGCGGGATGGTCGTGTTTGCACATGGGGATGGGGCCGATATGGCTGCTTGGGGCATGGGAACGAAGAATGTGAATTGGCACCTAAGGTAGTGGAAGCATTGAGCAATGTCAAAGCTGTTCATGTTGCGACAGGAGATTACACGACCTTCGTAGTGTCTGATGATGGTGATGTGTATTCATTTGGCTGTGGAGAATCTGCTAGTCTTGGGCATAATGCTGCTGGAAATGATGGGCAGGGCAACAGACATGCAAAATTGTTAAGTCCAGAGCTCGTCACTTCACTGAAACAGATCAATGAACGGGTGGTACAGATTAGTCTGACCAATTCCATATACTGGAATGCTCATACCTTTGCCCTCACTGAATCAGGGAAGCTGTATGCATTTGGAGCTGGAGACAAAGGACAGCTAGGAATTGAGCTTGTTGCCAACCAGACTGAAAGGGGAAATCCAGAAAGGGTTGAAATTGATCTTGGTTAA 1416 0.4739 MLALFFMCMLQATCSFFRQPANFAPDLDLSLSELAALDMCQKRAIFKPMTTEQRQDLKLRCGGSWKLVLRYLMAGEACCRREKSQAIAGPGHSIAVTGKGVVYSFGSNSSGQLGHGTTEEESRPQPIRTLQGIRIIQAAAGAGRTMLVSDSGQVYAFGKDSFGEAEYGGQGSKTVTAPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGSDGKLGHHTDPSDVEPRPLLGALEDIPVVQIAAGYCYLLCLACQPSGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQFGLLNLQPMVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECELAPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNAAGNDGQGNRHAKLLSPELVTSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVANQTERGNPERVEIDLG 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1760 471 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 8 470 - -
Ssu9g1760 471 Pfam Regulator of chromosome condensation (RCC1) repeat 100 147 IPR000408 -
Ssu9g1760 471 Pfam Regulator of chromosome condensation (RCC1) repeat 367 418 IPR000408 -
Ssu9g1760 471 Pfam Regulator of chromosome condensation (RCC1) repeat 151 202 IPR000408 -
Ssu9g1760 471 Pfam Regulator of chromosome condensation (RCC1) repeat 315 364 IPR000408 -
Ssu9g1760 471 Pfam Regulator of chromosome condensation (RCC1) repeat 264 312 IPR000408 -
Ssu9g1760 471 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 302 312 IPR000408 -
Ssu9g1760 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 368 435 IPR000408 -
Ssu9g1760 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 258 IPR000408 -
Ssu9g1760 471 SUPERFAMILY RCC1/BLIP-II 84 384 IPR009091 -
Ssu9g1760 471 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 8 470 - -
Ssu9g1760 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 315 IPR000408 -
Ssu9g1760 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 471 IPR000408 -
Ssu9g1760 471 Gene3D - 258 470 IPR009091 -
Ssu9g1760 471 Gene3D - 81 257 IPR009091 -
Ssu9g1760 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 100 151 IPR000408 -
Ssu9g1760 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 367 IPR000408 -
Ssu9g1760 471 PRINTS Chromosome condensation regulator RCC1 signature 152 168 IPR000408 -
Ssu9g1760 471 PRINTS Chromosome condensation regulator RCC1 signature 83 96 IPR000408 -
Ssu9g1760 471 PRINTS Chromosome condensation regulator RCC1 signature 102 118 IPR000408 -
Ssu9g1760 471 PRINTS Chromosome condensation regulator RCC1 signature 192 208 IPR000408 -
Ssu9g1760 471 PRINTS Chromosome condensation regulator RCC1 signature 208 222 IPR000408 -
Ssu9g1760 471 PRINTS Chromosome condensation regulator RCC1 signature 305 323 IPR000408 -
Ssu9g1760 471 PRINTS Chromosome condensation regulator RCC1 signature 363 384 IPR000408 -
Ssu9g1760 471 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 152 205 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1760 Ssu-Chr9 54911160 54913503 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1760 - - gmx:100779690 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1760 9 54911160 54913503 Ssu9g1760 9 54911160 54913503 ECH