Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1749 ATGGCTATGACTATTGTTGAGCAAAGCGGTGGCCAATATCACGTCTTGCTAATAATTGCAGATGGACAGGTAACTAGAAGCATTGATACACAGCATGGGCACTTAAGTCCACAGGAGCAGAAGACAATAGATGCAATAGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGACGATAACATCCCTTCTCGGGCATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGACGGGGAATGTAGATTCAATCAAGAAAGAGACAGATTTTGCCCTTTCAGCTTTGATGGAGATACCTTCTCAATATAAGGCGACCATAGAGCTTGGCATATTGGGTGCACGGAGGGGACATTCACCAGATAGGGTTTCTCTACCCCCACCTCTTTATAATAGGACTTCTTCCAGCGTCAGCACAAAATCTTCAAGGTCGAACAGTTTTCAGCAGAGGACCCCTACACATACTGGCTATGATAGTGGTGTTCACACGGAGCCATCTGCTAGTTCTTTATATGATAATAAGGTTTGCCCGATTTGTCTTACTAATGGGAAGGATATGGCCTTTGGTTGTGGACATCAGACTTGTTGTGAGTGTGGAGAAGACCTGCAATTCTGTCCCATTTGCCGTAGCACAATCCATACCAGAATAAGGCTTTACTAG 705 0.4326 MAMTIVEQSGGQYHVLLIIADGQVTRSIDTQHGHLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMTGNVDSIKKETDFALSALMEIPSQYKATIELGILGARRGHSPDRVSLPPPLYNRTSSSVSTKSSRSNSFQQRTPTHTGYDSGVHTEPSASSLYDNKVCPICLTNGKDMAFGCGHQTCCECGEDLQFCPICRSTIHTRIRLY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1749 234 Pfam Copine 4 127 IPR010734 -
Ssu9g1749 234 PANTHER COPINE FAMILY PROTEIN 1 1 234 - -
Ssu9g1749 234 Pfam Zinc finger, C3HC4 type (RING finger) 188 228 - -
Ssu9g1749 234 SUPERFAMILY RING/U-box 184 230 - -
Ssu9g1749 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 234 IPR013083 -
Ssu9g1749 234 ProSiteProfiles Zinc finger RING-type profile. 191 224 IPR001841 -
Ssu9g1749 234 MobiDBLite consensus disorder prediction 143 181 - -
Ssu9g1749 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG5 1 234 - -
Ssu9g1749 234 MobiDBLite consensus disorder prediction 133 181 - -
Ssu9g1749 234 CDD RING-HC_RGLG_plant 190 234 IPR045317 GO:0061630|GO:0070534
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1749 Ssu-Chr9 54767869 54769496 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1749 K16280 - gmx:100798816 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1749 9 54767869 54769496 Ssu9g1749 9 54767869 54769496 ECH