Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1733 ATGGAACTTGTTTTTACCAAATGGGTATGTGCATTCTTACTCTGCTGTGGTCTCATCACTTCTGGGGTATATTCAGTGGAGGGTTTGCATGGGGGTTCTAAAGTGAGAGGAGTGAACTTAGGAGGGTGGTTGGTCATCGAAGGTTGGATCAAGCCTTCACTGTTTGATGGCATTGCCAATGGAGACATGCTTGATGGGACAGAGGTGCAATTTAAGTCGGTGACATTGCAGAAGTATGTATCTGCTGAGAATGGGGGAGGAATGAATGTGACGGTTGACAGGGATGCCCCATCTTCATGGGAAACCTTCAGGTTATGGAGAGTATCTGAATCAGAGTTTCAACTTCGTACCTACCAAGGCCAATTTCTTACATGTGATGGTGGAGGCTGCTCTGTCTCTGCAACAGCGAAGTCTCCTTCAACATCAGAGACATATGAAATTGAGCGGAATGAAAAAAGTAGGATTCACATCAAGATGAAGGATGGGGCATATCTTCAGGCTACAACGGATGGTCAGCTTACAGCGGATTACCCAGGTGCACCAGGATGGGATGATAATGCTGCTACGTTTGAAATGACAATTGTATCAAATACCTTGCATGGAGATTACCAGCTAGCAAATGGATATGGGCATGACCGGGCAAAAGACGTTCTTAGGAGACATAGAAATAGCTTTATCACCATAGAGGATTTCAAATTTCTATATAAACATGGAATAAATACTGTGAGGATACCAGTTGGGTGGTGGATTGCTTTTGATCCTGATCCTCCGGGTCCATTTATTGGAGGAAGTCTTGAAGCTCTAGATAATGCATTTTCATGGGCACAAGAATACGATATAAAATGCATAATTGACCTTCATGCTGCTCCTGGTTCCCAAAATGGGATGGAGCATAGTGCAAGCAGAGATGGATTTACGGGCTGGCCAACTTCTCCAGATTACATTTCTGAATCATTACATGTTAttgaatttttagtttctagATATGCAAGACATCCTGCCTTGCTGGGAATTGAGCTATTGAATGAACCAGCTGCTGCAACAGTTCCATTAGATGTTTTAATTTCGTATTACAAGGAGGGCTACCATGTTGTTCAAAAATATTCGTCATCAGCTTATGTGATAATCTGCCAGAGAATTGGCGTTGCGGATCCTTTGGAACTTTATCAAGCCAACATAGGATCTAACAACTTAGTTTTGGATTTGCATTTCTACAATCTCTTTGAcacattttttgttaatatgagCGCTAGGGATAATATACAATACATATACAAAAGCCGGGAAGGTCAACTGCAGGCCTTAAACAATTCAAATGGCCCACTTGTTTTAGTTGGAGAGTGGGTGAATGAGTGGAATGTGACAAGCGGATCCCAAAAAGATTATCAGGACTTTGGAAGGGCACAGTTAGACGTCTATAATGCTGCTTCCTTTGGATGGTGTTATTGGACTCTCAAAAATGACAGAGAGCACTGGGATTTTGAATGGAACATTAGGAACAACTATCTTCAATCAGAATGCAATAATGTGGAATATACAAAATGTCTTCATGATGCCTATTCCATAATTTTCATAGCCGCATTTCATGCACATAAAGCTGAGGAGAAGCCTGATATTCAAAGTCCTCTTCTATAA 1635 0.4086 MELVFTKWVCAFLLCCGLITSGVYSVEGLHGGSKVRGVNLGGWLVIEGWIKPSLFDGIANGDMLDGTEVQFKSVTLQKYVSAENGGGMNVTVDRDAPSSWETFRLWRVSESEFQLRTYQGQFLTCDGGGCSVSATAKSPSTSETYEIERNEKSRIHIKMKDGAYLQATTDGQLTADYPGAPGWDDNAATFEMTIVSNTLHGDYQLANGYGHDRAKDVLRRHRNSFITIEDFKFLYKHGINTVRIPVGWWIAFDPDPPGPFIGGSLEALDNAFSWAQEYDIKCIIDLHAAPGSQNGMEHSASRDGFTGWPTSPDYISESLHVIEFLVSRYARHPALLGIELLNEPAAATVPLDVLISYYKEGYHVVQKYSSSAYVIICQRIGVADPLELYQANIGSNNLVLDLHFYNLFDTFFVNMSARDNIQYIYKSREGQLQALNNSNGPLVLVGEWVNEWNVTSGSQKDYQDFGRAQLDVYNAASFGWCYWTLKNDREHWDFEWNIRNNYLQSECNNVEYTKCLHDAYSIIFIAAFHAHKAEEKPDIQSPLL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1733 544 Pfam Cellulase (glycosyl hydrolase family 5) 226 488 IPR001547 GO:0004553|GO:0071704
Ssu9g1733 544 SUPERFAMILY (Trans)glycosidases 34 514 IPR017853 -
Ssu9g1733 544 SUPERFAMILY Actin-crosslinking proteins 69 191 IPR008999 -
Ssu9g1733 544 Gene3D - 47 188 - -
Ssu9g1733 544 Gene3D Glycosidases 189 517 - -
Ssu9g1733 544 PANTHER - 27 512 - -
Ssu9g1733 544 PANTHER FASCIN 27 512 IPR010431 GO:0007015|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1733 Ssu-Chr9 54591341 54596319 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1733 - - gmx:100809472 969.918