Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1722 atgggaagaagaaaaggagggaACAGTCGCACTCAAAGAAAGCATTTCCAGCAGAGCAGAGAGAATGTGTGGAAGTCGAAACGTCCTAAATCAGATTCAGATCCTTCCTCCCACAATCCTATTCCTATCTCCACCCCATTTGAAACTCAAAACCCCGCTTTCGATCACTATTACAAGgAGCAGGGAATCGTGTCCTCAGAAGAATGGGATGCATTTGTGCAAATTCTCAGAACTCCATTGCCGGCTGCATTCAGAATCAATTCCACTAGCCGGTTTTGTGCGGATATTCGGTCCCAACTGGAGAATGATTTTGTGCATTCTCTTCGGGCCGAGGTTGCAGAAGGGGATGATACGGAGGCTATTATACCTTTGCCATGGTATCCCGAGAATCTTGCTTGGCATTCGAATTTTTCCCGTAAGCAGCTCAGGAAGAATCAAACACTTGGGAGGTTTCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACGAGGCAGGAAGCTGTCAGCATGGCACCTCCCCTGTTCTTGGATGTACACTCAAATCATTTTGTACTTGATATGTGTGCAGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTTTACACCGATCAACTAAAGTAGGATCTCTGCCTGATGGAATGGTTATAGCAAATGATCTAGATATCCAAAGATGTAATCTTCTCATTCACCAAACAAAACGGATGAGCACAGCCAACCTAATCGTCACCAATCATGAAGCTCAACACTTCCCAAGATGTCTTTTAAATAGGAATTATGATAAAATGGAGCCAGATCAGCAAGACCAGATATTATTTGATCGTGTTCTGTGTGATGTCCCATGCAGCGGAGATGGAACCCTTCGTAAGGCACCTGATCTCTGGAGGAAGTGGAACACAGGGACAGGGAATGGGCTTCATAACCTACAAGTACTAATTGCTATGCGAGGTGTATCTTTACTTAAAGTTGGTGGAAGAATGATTTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCTGTTGTTGCAGAGGTTTTGCGGAGGTGTGGAGGGTCCATTGAACTTGTAGATGTCTCTAGTGAGCTTCCCCAACTTATTCATCGGCCAGGTCTTAAGAGATGGAAGGTATGTGACAAGGGCAAGTGGTTAGTCTCTTGCAAAGATGTTCCCAAGTTTCGTAGAAGTGTAGTTCTTCCCAGCATGTTTCTAAATGGCGGAAGCTATCAGGATGTTGTTGATGGTAATTGTAATATCAGCATTGGAGATGATATTATTACTGATGATGTTAATGGAAATTCTCAAGATGATGTTCAAGCAGTGGAGAATCCTGTGATGCATGAATTTACTGAGGAAGTTTCTGATTTCCCACTAGAGCGGTGCATGAGGTTAGTGCCTCATGATCAAAATACTGGAGCCTTCTTTATTGCTGTATTGCAGAAAGTTTCTCCTCTGCCAgCAATTCAGGTAAAACCTAGAAAAGAAGTTGATAAACATATTGACACAGCAAACCAGGGCAATGAGGATGGACAAGAATTGCAGATTAATCCATTGGAAAGTACACCTGAGGAAATTTCAGAGGCTAATATAAATGACAACGAACCTAATGCGGCAGATTGGAAAGTTAGTTCTGTTACATGTGGAGAAGTGGGTTTCAAGGAAGCCCAAGATCCCTGCAATGTAGAAAACATAACAAAGAATACTCCAGGCAAAAGAAAACTGCAGATTCAAGGCAAATGGAGAGGCATTGACCCTGTTGTCTTCTTCAAAGATGAAGTAATTATTAACAGCATAAAGGCATTTTATGGTATTGGTGAGCAGTTTCCATTCAATGGTCACCTTGTAACAAGAAACGATGATACAAGCCACGTGAAAAGAATTTACTATATCTCCAAGTCAGTCAAGGATATTCTGGAGTTGAACTTCTCAGCTGGGCAGCAACTTAAAATAACTTCTGTTGGCCTGAAGATTTTTGAAAGACAAACTTCATGTGAAGGTAGGTCTGCACCATGTGCTTTCCGGATCACTTCTGAAGGATTGCCCCTTATTCTCCCTCACATCTCCAAACAGATTCTATGTGCATCTGCTATAGACTTCAAGCATCTTCTGCAGTATAGAGCTGTAAAATTTGCAGATTTTGTGGTTGCTGAATTTGGTGAAAGGGCTGCAAACCTAATGCCCGGCTGTTGTGTGGTAGTTCTGGGTGAAGGGAGCAGAACTCCTACGGGGCCCCCCCATGTGGATGAGTCAACAATAGCCATTGGATGCTGGAAGGGTAGAGCAAGTTTGACTGTGATGGTTAGTGCATTGGAATGCCAAGAACTACTCGAAAGGCTTTTAATGCGTCTAGACACAGTAACAGAAAAGGACTCCTCCATGTATGAGGACAAACCGTCTGATTACAAGGGAGATGAAGCACAAGAGTCAAACGGTAAAAATGATGATTTAGAAGTTACTGGGGGTTAA 2472 0.4191 MGRRKGGNSRTQRKHFQQSRENVWKSKRPKSDSDPSSHNPIPISTPFETQNPAFDHYYKEQGIVSSEEWDAFVQILRTPLPAAFRINSTSRFCADIRSQLENDFVHSLRAEVAEGDDTEAIIPLPWYPENLAWHSNFSRKQLRKNQTLGRFHEFLKLENEIGNITRQEAVSMAPPLFLDVHSNHFVLDMCAAPGSKTFQLLEILHRSTKVGSLPDGMVIANDLDIQRCNLLIHQTKRMSTANLIVTNHEAQHFPRCLLNRNYDKMEPDQQDQILFDRVLCDVPCSGDGTLRKAPDLWRKWNTGTGNGLHNLQVLIAMRGVSLLKVGGRMIYSTCSMNPIENEAVVAEVLRRCGGSIELVDVSSELPQLIHRPGLKRWKVCDKGKWLVSCKDVPKFRRSVVLPSMFLNGGSYQDVVDGNCNISIGDDIITDDVNGNSQDDVQAVENPVMHEFTEEVSDFPLERCMRLVPHDQNTGAFFIAVLQKVSPLPAIQVKPRKEVDKHIDTANQGNEDGQELQINPLESTPEEISEANINDNEPNAADWKVSSVTCGEVGFKEAQDPCNVENITKNTPGKRKLQIQGKWRGIDPVVFFKDEVIINSIKAFYGIGEQFPFNGHLVTRNDDTSHVKRIYYISKSVKDILELNFSAGQQLKITSVGLKIFERQTSCEGRSAPCAFRITSEGLPLILPHISKQILCASAIDFKHLLQYRAVKFADFVVAEFGERAANLMPGCCVVVLGEGSRTPTGPPHVDESTIAIGCWKGRASLTVMVSALECQELLERLLMRLDTVTEKDSSMYEDKPSDYKGDEAQESNGKNDDLEVTGG 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1722 823 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 1 797 - -
Ssu9g1722 823 MobiDBLite consensus disorder prediction 791 814 - -
Ssu9g1722 823 Gene3D Vaccinia Virus protein VP39 49 392 IPR029063 -
Ssu9g1722 823 MobiDBLite consensus disorder prediction 1 48 - -
Ssu9g1722 823 Pfam 16S rRNA methyltransferase RsmB/F 177 352 IPR001678 GO:0008168
Ssu9g1722 823 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 1 797 IPR023267 GO:0001510
Ssu9g1722 823 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 133 154 IPR023270 GO:0016428
Ssu9g1722 823 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 360 379 IPR023270 GO:0016428
Ssu9g1722 823 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 650 662 IPR023270 GO:0016428
Ssu9g1722 823 MobiDBLite consensus disorder prediction 14 34 - -
Ssu9g1722 823 ProSitePatterns NOL1/NOP2/sun family signature. 275 286 IPR018314 GO:0003723|GO:0008168
Ssu9g1722 823 PRINTS RNA (C5-cytosine) methyltransferase signature 187 197 IPR023267 GO:0001510
Ssu9g1722 823 PRINTS RNA (C5-cytosine) methyltransferase signature 276 288 IPR023267 GO:0001510
Ssu9g1722 823 PRINTS RNA (C5-cytosine) methyltransferase signature 466 483 IPR023267 GO:0001510
Ssu9g1722 823 PRINTS RNA (C5-cytosine) methyltransferase signature 326 342 IPR023267 GO:0001510
Ssu9g1722 823 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 72 484 IPR001678 GO:0008168
Ssu9g1722 823 MobiDBLite consensus disorder prediction 791 823 - -
Ssu9g1722 823 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 54 484 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1722 Ssu-Chr9 54364167 54371515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1722 K15334 - gmx:100808598 1467.98