Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1721 ATGGCTAGCGGAGGAGGGTACGGAGATGCGAACCAGAAGGTAGATTACGTGTTCAAGGTGGTGCTAATTGGTGATTCCGCGGTGGGGAAGTCGCAGATACTTGCTCGCTTCGCCAGAAACGAGTTCAGTTTGGACTCGAAGGCCACAATCGGCGTCGAGTTCCAAACGCGCACTTTGGTGATTCAGCACAAGAGCGTCAAGGCTCAGATCTGGGACACTGCGGGCCAAGAACGATATAGAGCAGTTACAAGTGCATACTACAGGGGTGCTGTTGGGGCAATGTTGGTTTATGACATCACAAAACGTCAAAGCTTTGATCACATACCTCGTTGGTTAGAAGAACTGCGTAACCATGCTGATAAGAATATAGTCATCATTCTTATAGGAAACAAAAGTGATCTTGAGAACCAGCGTGCAGTACCCACAGAGGATGCAAAAGAATTTGCCGAGAAAGAAGGCTTATTTTTCTTAGAGACCTCAGCACTGGAAGCAACTAACGTTGAAGCAGCCTTCATGACTGTTTTGACAGAAATATTCAACATTGTCAACAAGAAGAACCTAGCAGCTGTTGATAATCAGGGAAATGGCAACTCAGCATCTCTGTCTGGCAAGAAGATTATTGTTCCTGGTCCTGCACAAGAAATCCCCAAGAGGAACATGTGTTGTCAGTCATCCtga 678 0.4617 MASGGGYGDANQKVDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHIPRWLEELRNHADKNIVIILIGNKSDLENQRAVPTEDAKEFAEKEGLFFLETSALEATNVEAAFMTVLTEIFNIVNKKNLAAVDNQGNGNSASLSGKKIIVPGPAQEIPKRNMCCQSS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1721 225 ProSiteProfiles small GTPase Ras family profile. 11 221 IPR001806 GO:0003924|GO:0005525
Ssu9g1721 225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 187 IPR027417 -
Ssu9g1721 225 SMART arf_sub_2 3 185 - -
Ssu9g1721 225 SMART rho_sub_3 20 177 IPR001806 GO:0003924|GO:0005525
Ssu9g1721 225 Pfam Ras family 19 178 IPR001806 GO:0003924|GO:0005525
Ssu9g1721 225 SMART ran_sub_2 23 220 - -
Ssu9g1721 225 PRINTS Transforming protein P21 ras signature 59 81 - -
Ssu9g1721 225 PRINTS Transforming protein P21 ras signature 121 134 - -
Ssu9g1721 225 PRINTS Transforming protein P21 ras signature 18 39 - -
Ssu9g1721 225 PRINTS Transforming protein P21 ras signature 41 57 - -
Ssu9g1721 225 PRINTS Transforming protein P21 ras signature 156 178 - -
Ssu9g1721 225 Gene3D - 10 222 IPR027417 -
Ssu9g1721 225 PANTHER - 1 222 - -
Ssu9g1721 225 ProSiteProfiles small GTPase Rab1 family profile. 13 222 - -
Ssu9g1721 225 PANTHER RAB GTPASE-LIKE PROTEIN A1D 1 222 - -
Ssu9g1721 225 SMART ras_sub_4 15 181 - -
Ssu9g1721 225 TIGRFAM small_GTP: small GTP-binding protein domain 17 174 IPR005225 GO:0005525
Ssu9g1721 225 ProSiteProfiles small GTPase Rho family profile. 11 182 - -
Ssu9g1721 225 SMART rab_sub_5 18 181 - -
Ssu9g1721 225 CDD Rab11_like 15 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1721 Ssu-Chr9 54358155 54362180 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1721 K07904 - gmx:100527786 426.402