Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1706 ATGGGAAAAAGACAATCTCTGCGCAACAAAGCCACCCACCTCGTATCGGTCCTTCTTAACCCCATCTCTGATTCCGACACTCAAAATCCCAAACCCTCCAAACACCCCTCACCCACACCCACACCTTCCGGAGAAGTAGGTGAATCAGGGACAAATGATGAAGAGGGTAACCATGGTTTAGTTGATGGGCCTGATACTTCATCCTTCACTGCGTTCCTTTATTCTCTGTTGTCTTCCTCTGACACTGGAGATATTGCAAACTCACACGTGCAGAGTGATGATAAAGCTGCACCTGATAACAACCCTTTACCAGACTCGTCGCTGAAGGAAAATGGTGGGAAGAAAAGTCTGTTTTCTAGAAGCAAGCAATCGCTCGGTAGAGGCATTCGTCAAGCTGCGAGAATGGGTGGATTTCGCCATCAAGATCGCAAGGATAATGCTGAAATGAAACACGATGATGGGAATGGTTCTAAGGCTTCTGGTGTTGAGATGAGGCGTATTGAGCCTGTGGAAGAGTCTGTGACTGTGCCTTCGGTTGATCTTCCAGAAATTTCTGAACCCTCAGTTCTGCTTTCGGACAGTATAAGGAATGTTCTCTATGTTTCTCTTCCACCTCTTATTCACGGAAGGAAATGGTTGTTGTTATACAGCACTTGGAGGCATGGTATATCACTTTCCACTCTTTACCGGAGAAGCATGCTTTGGCCTGGATTGAGTTTGCTGGTTGTTGGAGATAAAAAAGGAGCAGTATTTGGCAGCTTGGTTGAAGCACCTCTCAGATCATCCAGCAAGAAAAAATACCAGGGAACAAACAATACATTTGTTTTCACAAATATCTCTGGTCGTCCTGTTATATATCGTCCAACAGGGGTAAACCGCTATTTCACGCTTTGCAACACTGACTACTTGGCAATTGGTGGAGGAGGTCATTTTGCGCTTTATTTGGATGGTGATCTATTGAATGGTTCAAGTTCAGTCTCAGAAACTTATGGGAATCCTTGCCTTGCAAATTCTCAAGACTTTGAAGTGAAGGAAGTAGAGTTATGGGGCTTTGTATGTGCTTCAAAATATGAGGAAGTACTCGCAATGAGTAGAACAGAAGCACCTGGGATCTGCCGATGgtaa 1125 0.4462 MGKRQSLRNKATHLVSVLLNPISDSDTQNPKPSKHPSPTPTPSGEVGESGTNDEEGNHGLVDGPDTSSFTAFLYSLLSSSDTGDIANSHVQSDDKAAPDNNPLPDSSLKENGGKKSLFSRSKQSLGRGIRQAARMGGFRHQDRKDNAEMKHDDGNGSKASGVEMRRIEPVEESVTVPSVDLPEISEPSVLLSDSIRNVLYVSLPPLIHGRKWLLLYSTWRHGISLSTLYRRSMLWPGLSLLVVGDKKGAVFGSLVEAPLRSSSKKKYQGTNNTFVFTNISGRPVIYRPTGVNRYFTLCNTDYLAIGGGGHFALYLDGDLLNGSSSVSETYGNPCLANSQDFEVKEVELWGFVCASKYEEVLAMSRTEAPGICRW 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1706 374 MobiDBLite consensus disorder prediction 9 32 - -
Ssu9g1706 374 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 368 - -
Ssu9g1706 374 MobiDBLite consensus disorder prediction 104 126 - -
Ssu9g1706 374 ProSiteProfiles TLDc domain profile. 189 352 IPR006571 -
Ssu9g1706 374 PANTHER TLD-DOMAIN NUCLEOLAR PROTEIN 1 368 - -
Ssu9g1706 374 MobiDBLite consensus disorder prediction 1 65 - -
Ssu9g1706 374 Pfam TLD 214 351 IPR006571 -
Ssu9g1706 374 MobiDBLite consensus disorder prediction 136 160 - -
Ssu9g1706 374 SMART 109ultra 188 352 IPR006571 -
Ssu9g1706 374 MobiDBLite consensus disorder prediction 85 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1706 Ssu-Chr9 54190185 54193941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1706 177 360 EF-hand Containing Proteins AT5G06260 28.922 2.92e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1706 - - gmx:100804124 634.795