Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1703 ATGGCTGTATCAAGAGAGCTAAGCATGGTGGATGAGAAATCGTCCCTGCAAAGAAAAGGAAGTAGAAATTGCATAAGTGAAGCTAACTACATTGAATTTTATGATGTCAAGGTTGTGACCCCCACTGGTAATGTCTTGGTGGATGATCTGACTCTTAGGGTTGAACCAGGATCTAATCTTTTGATTACAGGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTTCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATAGTGAAACCTGGAATTGGCTCTGATCTTAATAAAGAGATTTTCTATGTGCCACAAAGGCCATACACTGCTGTAGGAACACTTCGAGATCAGTTGATTTATCCTCTTACTGCAGATCAAGAGGTTGAACAACTCACAGATCGTGGGATGGTGGAGctgttaaaaaatGTTGACCTTGAATACCTGTTGGACCGTTACCCGCCCGAAAAGGAGGTAAACTGGGGTGACGAACTTTCATTGGGTGAACAACAGAGATTGGGCATGGCAAGACTTTTCTACCATAAGCCTAAATTTGCAATTCTAGATGAGTGCACAAGTGCTGTCACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTTAGGGCCATGGGAACATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCATTCCACGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAGGGAGGGCTCTTCTACTGAAATGGGGATTGATACAATGAAGGCATCAGAAACAAAACGACAGAGTGATGCAAAGGCAGTTCAACGTGCATTTGCCATGAGCAAAAAGGATTCTGCGTTCTCAAATACAAAGGCACAGTCATATTTTGCGGAGGTGATATCATCATCTCCATCTATGAATCATACAATTTCACCATCTGCTGTTCCCCAACTCTGTGGTAATACGAGGGTATTGCCATTGAGAGTAGCTGCCATGTGCAAAGTATTGGTACCCACTGTACTTGATAAGCAAGGTGCACAACTGCTCACTGTTGCTTTTCTTGTTGTTGCAAGAACATGGGTCTCAGATCGTATTGCATCACTAAATGGTACCACTGTCAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGCTTAAGTGTTCTTCAAAGCGCTGCATCTTCTTTCATTGCTCCTTCTATAAGGCACTTGAGAGCCAGGTTGGCCCTGGGATGGCGGATTCGTTTGACGCAACATCTGCTAAAAAACTACTTGAGAAACAATTCATTCTACAAGGTCTTTCACATGGCAAGCAAAAATATTGATGCAGATCAGAGGATAACTCACGACCTGGAGAAGTTAACAACAGACTTGTCTGGATTGGTAACTGGAATGGTAAAGCCATCTGTGGATATTTTGTGgtTCACATGGAGAATGAAGCTGTTAACAGGTCAGAGGGGGGTTGCCATACTTTATGCTTACATGTTACTTGGTCTGGGATTTTTAAGAACTGTTACTCCTGATTTTGGTGATTTGATAAGCCAAGAACAACAACTTGAAGGAACCTTTAGGTTCATGCATGAAAGACTCTGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGAACTCGAGAAAAAACTATGGTTGAATCAAGATTCAGAGAGCTTCTCTCCCACTCCAATtaccttttaaaaaagaagtggCTGTTTGGTATACTGGATGATTTTATCACAAAGCAACTCCCTCATAATGTGACTTGGTTGCTGAGCTTATTATATGCTATGGAACATAAGGGAGATCGTGCTTCAATAAGTACTCAGGGTGAGCTGGCACATGCATTGAGATTCTTAGCATCTGTTGTTTCTCAAAGctttttagcttttggagacATTCTTGAATTGCACAGAAAGTTTGTAGAGCTTTCTGGTGGTATTAATCGGATTTTTGAGCTTGAAGAACTTCTGGATGCAGCACAGTCTGTGGACTCCATCAATGGTAGTATTACACCTTCAATGAGGGATTATTATGCGAAAGATGCTATTTCCTTCTCTAAGGTTGATATTGTAACCCCTGCCCAGAAGATGTTGGCCAGGGAGTTGACATGTGACATTGAGCTTGGTAGAAGCCTGCTTGTTACTGGTCCAAATGGAAGTGGAAAAAGTTCCATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGCAAGTGGAGGGCTCTCTAGACCATCTGAAGATGTGGATCAAGAGGCTGGATCAGGTTGTGGCATCTTCTATGTTCCTCAGCGGCCTTACACATGCTTGGGAACATTGCGGGACCAAATTATATACCCACTGTCCCGTGAGGAAGCAGAGTTTAGAGCATTGAAGATGTATGGAAAAGGTGAAAAACATGCTGACCCTAGAAAATTATTGGACACACACTTGCAAATTATCCTAGAGAATGTTCGGTTGAATTATCTTCTTGAAAGGGACAACCGTGGCTGGGATGCAAATCTAAACTGGGAAGACACTCTCTCTCTTGGAGAACAGCAGAGGTTAGGCATGGCGCGTTTGTTCTTCCATAGGCCTAAATATGGTATCCTGGATGAGTGTACCAATGCAACTAGCGTTGATGTTGAAGAACACCTATATGGGCTTGCAAACAAAATGGGGATCACAGTTGTTACTTCCTCACAACGTCCTGCTTTAATACCATATCATTCCATGGAATTGCGTCTGATTGATGGTGAGGGTAATTGGGAACTTCGTTCAATCAAGCAATGA 2766 0.4172 MAVSRELSMVDEKSSLQRKGSRNCISEANYIEFYDVKVVTPTGNVLVDDLTLRVEPGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEVEQLTDRGMVELLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREGSSTEMGIDTMKASETKRQSDAKAVQRAFAMSKKDSAFSNTKAQSYFAEVISSSPSMNHTISPSAVPQLCGNTRVLPLRVAAMCKVLVPTVLDKQGAQLLTVAFLVVARTWVSDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSAASSFIAPSIRHLRARLALGWRIRLTQHLLKNYLRNNSFYKVFHMASKNIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGTFRFMHERLCTHAESVAFFGGGTREKTMVESRFRELLSHSNYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQSVDSINGSITPSMRDYYAKDAISFSKVDIVTPAQKMLARELTCDIELGRSLLVTGPNGSGKSSIFRVLRGLWPIASGGLSRPSEDVDQEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEFRALKMYGKGEKHADPRKLLDTHLQIILENVRLNYLLERDNRGWDANLNWEDTLSLGEQQRLGMARLFFHRPKYGILDECTNATSVDVEEHLYGLANKMGITVVTSSQRPALIPYHSMELRLIDGEGNWELRSIKQ 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1703 921 Pfam ABC transporter transmembrane region 2 330 595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu9g1703 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 235 IPR027417 -
Ssu9g1703 921 Gene3D - 19 293 IPR027417 -
Ssu9g1703 921 CDD ABCD_peroxisomal_ALDP 31 239 - -
Ssu9g1703 921 Gene3D - 676 913 IPR027417 -
Ssu9g1703 921 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 31 260 IPR003439 GO:0005524
Ssu9g1703 921 ProSitePatterns ABC transporters family signature. 165 179 IPR017871 GO:0005524
Ssu9g1703 921 Pfam ABC transporter 48 193 IPR003439 GO:0005524
Ssu9g1703 921 ProSitePatterns ABC transporters family signature. 839 853 IPR017871 GO:0005524
Ssu9g1703 921 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 23 181 - -
Ssu9g1703 921 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 176 921 - -
Ssu9g1703 921 Pfam ABC transporter 701 867 IPR003439 GO:0005524
Ssu9g1703 921 CDD ABCD_peroxisomal_ALDP 683 914 - -
Ssu9g1703 921 SUPERFAMILY ABC transporter transmembrane region 344 652 IPR036640 GO:0005524|GO:0016021
Ssu9g1703 921 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 23 181 - -
Ssu9g1703 921 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 176 921 - -
Ssu9g1703 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 677 910 IPR027417 -
Ssu9g1703 921 SMART AAA_5 708 920 IPR003593 -
Ssu9g1703 921 SMART AAA_5 56 235 IPR003593 -
Ssu9g1703 921 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 683 919 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1703 Ssu-Chr9 54158335 54170029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1703 1 921 Acyl Lipid Metabolism Gene Families AT4G39850 76.815 0.0 1462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1703 K25819 - gmx:100813765 1730.3