Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1699 ATGGGAGGCAATTCACCAGAGAGGAAACCTGGTTGTGGCTTGATAACGGCAGTATTCGGGCGAAACAATCCATGGTCACGCAAAACAGTCTCTCCAGGTTCTTCTCCTATAGCCAACAATTTTGGAAACCCTTCAAACACTCAAGATTCACAACAACGATGTGGAGGCTCTAATGATGCTGCTTCAGTTGGAGAAGCTTCACATAATGACGTCACAAACTCTTCATCTCGTTCTTTCTCCAATCCTCAAAAAACAACCCATGTTGTAAGCCAAAGGAAACCACAACATCCCAATGAAACAACAATGAGAAAAGGGCCCCCACCTAATCAAGGCTACGTCAACCAAGGAAGAAAGGTGCCAAAAGAAGTTGTTGGCATTTCTGGTGAACTTGAAAGTATGATCAACGATCATATAAAGTCCAAGGGAAGTAGTACCCTTGTTCGAGCTTCTTCCAGCAACGTGATGTTGTTTGGTAATTTAGGTAACCTTAGGCAAGGAGGCGCTGGATCAGATCACAATGCAACGGATTACTATGTTGGTGATGGAGGATACATAAACCATACCGCAGGACGTGAATGTGATAATAGTAGTTATAGCAAAGAAGCTAAACCAAGCAAGGAACAAACAGGTTCGCTGTGTAGGGCTTTGTCTACTAGAATGGATCCCGAGCAATTGAAGATAATGGGCAATGAGGATTATAAGAATGGAAGGTTTGCAGAGGCCTTGGCTTTGTACGATGCAGCCATTGCAATTGACCCCAATAAGGCTTCTTATAGGAGCAACAGAAGTGCAGCATTAACAGCTCTTGGTAGGCTTCTAGAGGCTGTTTTTGAATGCAGAGAAGCCATTCGAATTGAGTCTCATTACCAAAGAGCTCATCATCGGTTGGGAAATTTGCACTTTAGATTAGGAGAAACAGATAAGGCCTTGTATCACTATAAGCAAGCAGGACCAGAGGCCGATCCTGATGAAATTGCTAAAGTAAAGATTCTCCAGGTACATCTAAACAAATGCACTGAGGCTCGCAGGTTGGGAGACTGGAACACACTTATAAGTGAGACCAATAATGCTATATCATCTGGTGCAAATTCTGCCCCACAAATATATGCATTACAAGCCGAAGCCTTGCTAAAGCTCCGTAGGCAACAAGATGCAGACAAAGTAATGTCAAAGTGCCCTAAATTTGATGTTGATGAGTGTACTAGGTTCTTTGGACCTATTGGTAGTGCAAATTTGTTGGTGATACGTGCTCAGGTTGATTTGGCTGCTGGCAGATTTGAAGATGCTTTAGAGGTAGCACAGAAAGCAGCTAGGTTGGATTCTAATAGCAGAGAGGCGAACAAGGTGATGAGAAAGGCTCGAGCTGTCACAGCTGCTCGGGCAAAGGGAAATGAACTTTTTAAGGCATCCAAATTCTCTGAGGCTTGCACTGCCTATGGAGAAGGCCTTGAGCATGATCCATATAACTCCGTTTTACTATGCAATAGAGCTGCATGTAGATCAAAACTAGGCCAATTTGAGAAAGCTATGGATGATTGCACTGCTGCCCTTAACTTACGCCCATCCTATAGCAAGGCCAGGATGAGAAGGGCAGATTGTAATGCTAAGTTGGAAAGATGGGCAGCTTCGATACAAGACTATGAAATCTTGCTAAAAGAGACACCAGAAGATGAGCAGGTAAAGCAGGAATTGTTGGAGGCCCAAGCACAGCTTAAGAAACAGGCGAGGTGA 1731 0.4385 MGGNSPERKPGCGLITAVFGRNNPWSRKTVSPGSSPIANNFGNPSNTQDSQQRCGGSNDAASVGEASHNDVTNSSSRSFSNPQKTTHVVSQRKPQHPNETTMRKGPPPNQGYVNQGRKVPKEVVGISGELESMINDHIKSKGSSTLVRASSSNVMLFGNLGNLRQGGAGSDHNATDYYVGDGGYINHTAGRECDNSSYSKEAKPSKEQTGSLCRALSTRMDPEQLKIMGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNRSAALTALGRLLEAVFECREAIRIESHYQRAHHRLGNLHFRLGETDKALYHYKQAGPEADPDEIAKVKILQVHLNKCTEARRLGDWNTLISETNNAISSGANSAPQIYALQAEALLKLRRQQDADKVMSKCPKFDVDECTRFFGPIGSANLLVIRAQVDLAAGRFEDALEVAQKAARLDSNSREANKVMRKARAVTAARAKGNELFKASKFSEACTAYGEGLEHDPYNSVLLCNRAACRSKLGQFEKAMDDCTAALNLRPSYSKARMRRADCNAKLERWAASIQDYEILLKETPEDEQVKQELLEAQAQLKKQAR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1699 576 MobiDBLite consensus disorder prediction 1 115 - -
Ssu9g1699 576 SUPERFAMILY TPR-like 222 445 IPR011990 GO:0005515
Ssu9g1699 576 MobiDBLite consensus disorder prediction 22 108 - -
Ssu9g1699 576 Pfam TPR repeat 229 270 - -
Ssu9g1699 576 SMART tpr_5 490 523 IPR019734 GO:0005515
Ssu9g1699 576 SMART tpr_5 290 323 IPR019734 GO:0005515
Ssu9g1699 576 SMART tpr_5 410 443 IPR019734 GO:0005515
Ssu9g1699 576 SMART tpr_5 222 255 IPR019734 GO:0005515
Ssu9g1699 576 SMART tpr_5 524 557 IPR019734 GO:0005515
Ssu9g1699 576 SMART tpr_5 256 289 IPR019734 GO:0005515
Ssu9g1699 576 SMART tpr_5 456 489 IPR019734 GO:0005515
Ssu9g1699 576 Pfam Tetratricopeptide repeat 502 557 - -
Ssu9g1699 576 Gene3D Tetratricopeptide repeat domain 220 576 IPR011990 GO:0005515
Ssu9g1699 576 PANTHER OS01G0616333 PROTEIN 5 575 - -
Ssu9g1699 576 SUPERFAMILY TPR-like 457 574 IPR011990 GO:0005515
Ssu9g1699 576 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 575 IPR044534 -
Ssu9g1699 576 ProSiteProfiles TPR repeat profile. 222 255 IPR019734 GO:0005515
Ssu9g1699 576 Pfam Tetratricopeptide repeat 292 322 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1699 Ssu-Chr9 54087885 54090186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1699 234 526 Glycosyltransferase AT3G04240 22.184 4.60e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1699 - - gmx:100811282 897.886