Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1676 ATGGAGAAGCACGGCGACGATGAGGAGCAACCCAAACCTGTGGTTCTCATCACAGGATGCTCCACGGGGGGCATAGGGCACGCGCTTGCACGCGCGTTCGCGGCGAACAGGTGCAGGGTGGTGGCCACCAGCAGATCCCGGTCGAGCATGGCGGATCTGGAACACGACCACAGGTTCTTGTTGGAAGAGCTGGATGTTCAGTCCGATGAGAGCGTGCGCAGAGTGGTTGATACTGTTGTTGATAAGTACGGTCGCATCGATGTGCTCGTTAACAACGCTGGTGTTCAGTGTGTGGGTCCACTTGCCGAGGTTCCTCTCTCTGCTATCCAGAATACTTTTGACACCAACGTCTTTGGTTCCATGAGAATGGTTCAGGCTGTTGTTCCTCATATGGCAACTAGGAAACAGGGGAAGATTGTCAACATTGGTAGTGTTGCTGCCTTGGCCTCTGGACCTTGGTCAGGCACTTACACTGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGATTGGAACTTGGACATTTTGGAATTGATGTTGTCAATGTCGTTCCTGGAgctatcaaatcaaatattggAAATTCTGCCGTAGCCAGCTACAACCGCATGCCTGAATGGAAATTATTCAAGCCTTTTGAAGCAGCAATCCGAGACAGAGCTTATTTTTCTCAGAGGTCCAAATCAACCCCTACAGATGAGTTTGCTAAGAACACTGTAGCTGCTGTCCTTAAGGAGAAACCACCTGCTTGGTTCTCCTATGGGCATTACTCTACCATCATGGCCATCGTGTACCATTTACCAATCTCTGTTAGAGATTTTCTTTTGAAGAAAGCAATGAAAGGTTGA 852 0.4789 MEKHGDDEEQPKPVVLITGCSTGGIGHALARAFAANRCRVVATSRSRSSMADLEHDHRFLLEELDVQSDESVRRVVDTVVDKYGRIDVLVNNAGVQCVGPLAEVPLSAIQNTFDTNVFGSMRMVQAVVPHMATRKQGKIVNIGSVAALASGPWSGTYTASKAALHALTDTLRLELGHFGIDVVNVVPGAIKSNIGNSAVASYNRMPEWKLFKPFEAAIRDRAYFSQRSKSTPTDEFAKNTVAAVLKEKPPAWFSYGHYSTIMAIVYHLPISVRDFLLKKAMKG 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1676 283 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 10 281 - -
Ssu9g1676 283 Gene3D - 13 268 - -
Ssu9g1676 283 PANTHER BNAC02G00550D PROTEIN 10 281 - -
Ssu9g1676 283 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 273 IPR036291 -
Ssu9g1676 283 Pfam short chain dehydrogenase 14 198 IPR002347 -
Ssu9g1676 283 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Ssu9g1676 283 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 193 - -
Ssu9g1676 283 Coils Coil 50 70 - -
Ssu9g1676 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Ssu9g1676 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Ssu9g1676 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Ssu9g1676 283 CDD 17beta-HSD-like_SDR_c 14 259 - -
Ssu9g1676 283 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Ssu9g1676 283 PRINTS Glucose/ribitol dehydrogenase family signature 15 32 IPR002347 -
Ssu9g1676 283 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Ssu9g1676 283 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Ssu9g1676 283 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1676 Ssu-Chr9 53742278 53749798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1676 13 194 Acyl Lipid Metabolism Gene Families AT1G24360 32.447 2.52e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1676 - - gmx:100789660 513.072