Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1664 atgTTGTGCGTCAACACTGCCTTCACCTCTTTCTTACCCAGAAAATCCACTTGCGTTTTTTCCTCCAAATCAACCACCCCAATTTCCTGCACCCTCCCAGGAACAGTTGCTGAACCAAAATCTACAGCTGCTGGTGAACCACTTTTGCTTAATGCAGTTCGTGGGATAGATGTTGAAAGACCCCCGGTTTGGCTCATGAGGCAAGCAGGGAGGTACATGAAGAGTTACCAAACCATCTGTGAAAAATATCCTTCATTCCGTGAAAGGTCTGAAAATGTTGATCTTGTGGTGGAAATTTCTCTGCAACCGTGGCATGTTTTCAAGCCTGATGGAGTGATTTTATTCTCAGACATTCTTACCCCACTTTCTGGAATGAATATACCCTTTGATATTGTGAAGGGTACGGGTCCTGTCATATTTGATCCTATTCACACAATTGCCCAAGTCGATCAAGTGAGGCAGTTTATTCCTGAAGATTCAGTTCCATACGTTGGTGAAGCACTGACAATTTTGAGGAAAGAGGTGGATAATAAAGCTGCAGTCCTTGGTTTTGTTGGGGCACCGTTCACCCTGGCATCATATGTGGTTGAAGGTGGTTCATCTAAAAACTTctcaaaaataaagagattgGCTTTCTCTGAATCCAAGATCTTGCACTCATTACTGCAGAAGTTTACAACTTCAATGGCAAGATACATTCAATACCAAGCTGACAATGGAGCCCAAGCTGTTCAGATCTTTGATTCATGGGCTACAGAGCTTAGTCCAGTGGATTTTGAAGAATTCAGTTTGCCTTACTTGAAGCAGATTATTGATACTGTGAAGAAAAGCCATCCAAAACTCCCTTTGATCCTCTATGCAAGTGGGTCTGGGGGCTTGCTTGAAAGACTAGCTTTGACAGGCGTCGATGTAGTTAGCTTGGATTGGACGGTTGATATGGCTGATGGTAGGAGGCGACTGGGACCAAATATAGCTGTCCAGGGGAACGTGGACCCTGGTGTTCTTTTTGGTTCAAAAGAGTTCATCACTGATCGGATAAATGACACTGTGAGAAAAGCAGGTAGAGGGAAACATATCTTGAATCTTGGTCATGGCATTAAAGTAGGTACGCCTGAGGAGAATGTTGCACATTTTTTTAAGGTTGCTAAAGCAATCAGATACTAA 1164 0.4261 MLCVNTAFTSFLPRKSTCVFSSKSTTPISCTLPGTVAEPKSTAAGEPLLLNAVRGIDVERPPVWLMRQAGRYMKSYQTICEKYPSFRERSENVDLVVEISLQPWHVFKPDGVILFSDILTPLSGMNIPFDIVKGTGPVIFDPIHTIAQVDQVRQFIPEDSVPYVGEALTILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKNFSKIKRLAFSESKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIIDTVKKSHPKLPLILYASGSGGLLERLALTGVDVVSLDWTVDMADGRRRLGPNIAVQGNVDPGVLFGSKEFITDRINDTVRKAGRGKHILNLGHGIKVGTPEENVAHFFKVAKAIRY 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1664 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 182 198 IPR000257 GO:0004853|GO:0006779
Ssu9g1664 387 Hamap Uroporphyrinogen decarboxylase [hemE]. 46 386 IPR006361 GO:0004853|GO:0006779
Ssu9g1664 387 SUPERFAMILY UROD/MetE-like 48 386 IPR038071 -
Ssu9g1664 387 Pfam Uroporphyrinogen decarboxylase (URO-D) 48 384 IPR000257 GO:0004853|GO:0006779
Ssu9g1664 387 Gene3D - 35 387 IPR038071 -
Ssu9g1664 387 CDD URO-D 50 384 IPR006361 GO:0004853|GO:0006779
Ssu9g1664 387 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 62 71 IPR000257 GO:0004853|GO:0006779
Ssu9g1664 387 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 2, CHLOROPLASTIC 18 387 - -
Ssu9g1664 387 TIGRFAM hemE: uroporphyrinogen decarboxylase 49 383 IPR006361 GO:0004853|GO:0006779
Ssu9g1664 387 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 18 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1664 Ssu-Chr9 53529625 53532839 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1664 K01599 - gmx:100800753 753.051