Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1653 ATGGCCGATCAGTTATCGAAGGCGGAGGAATACGAGAAGAAAGCCGAGAAGAAGCTCAGCGGCTGGGGCTTGTTCGGCAACAAATACGAAGATGCTGCCGATCTCTTCGATAAAGCCGCCAATTCCTTCAAGCTCGCTAAATCATGGGACAAAGCGGGATCGACATACCTAAAGTTAGCAAATTGTCATTTGAAGGTGGACAGCAAGCATGAAGCTGCACAGGCCTATGTTGATGCTGCACATTGCTACAAAAAGAGTAATATAAACGAGGCTGTGTCTTGCTTAGAACATTCTGTAAATCTTTTCTGTGACATTGGAAGACTCTCTATGTCTGCTAGATATTTGAAGGAAATTGCTGAATTGTACGAGTCTGAACAGAATATTGAGCAGGCTCTTGTTTACTATGAAAAATCAGCTGATTTTTTTCAAGGTGAAGATGTGACAACTTCTGCAAATCAATGCAAACAAAAAGTTGCCCAATTTGCTGCTCAGTTAGAACAATATCAGAAGTCGATTGAGATTTATGAAGAGATAGCTCGCCAATCCCTCAACAATAATTTGCTGAAGTATGGAGTTAAAGGACATCTGCTTAATGCTGGCATCTGCCAACTCTGTAAAGGGGACGTTATTGCTATAACCAATGCATTAGAACGATATCAGgAATTAGATCCAACATTTTCAGGAACACGTGAATATAGATTGTTGGCGGATATTGCTGCTGCAATTGATGAAGAAGATGTGGGCAAGTTTACTGATGTTGTCAAGGAATTTGATAGCATGACCCCTCTGGATTCTTGGAAGACCACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTGGAGGAGGATGATCTTACTTGA 870 0.4138 MADQLSKAEEYEKKAEKKLSGWGLFGNKYEDAADLFDKAANSFKLAKSWDKAGSTYLKLANCHLKVDSKHEAAQAYVDAAHCYKKSNINEAVSCLEHSVNLFCDIGRLSMSARYLKEIAELYESEQNIEQALVYYEKSADFFQGEDVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVIAITNALERYQELDPTFSGTREYRLLADIAAAIDEEDVGKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1653 289 CDD SNAP 20 278 IPR000744 GO:0006886
Ssu9g1653 289 Gene3D Tetratricopeptide repeat domain 3 288 IPR011990 GO:0005515
Ssu9g1653 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Ssu9g1653 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Ssu9g1653 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Ssu9g1653 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Ssu9g1653 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Ssu9g1653 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Ssu9g1653 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Ssu9g1653 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Ssu9g1653 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Ssu9g1653 289 Coils Coil 151 185 - -
Ssu9g1653 289 Pfam Soluble NSF attachment protein, SNAP 6 278 - -
Ssu9g1653 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
Ssu9g1653 289 Coils Coil 271 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1653 Ssu-Chr9 53345619 53349818 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1653 K15296 - gmx:100812517 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1653 9 53345619 53349818 Ssu6g3096 6 70496141 70498811 PCT