Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1610 ATGGCGGCCGCGAACGCTCCGATCGCCATGAGAGAAGCTCTCACTTTGCCGAGCATTGGCATAAATCAGCAGTTCATCACTTTCACGCATGTGACGATGGAGTCCGATAAGTATATATGCGTTCGAGAAACGGCTCCTCAGAATAGTGTGGTTATCATTGATATGAACATGCCGATGCAGCCTTTGAGGAGGCCTATTACTGCAGATTCGGCTCTTATGAATCCGAATTCCAGAATCCTTGCTTTGAAAGCTCAACTCCAAGGAACAACTCAAGATCACCTACAAATTTTTAACATTGAAATGAAAGCAAAGATGAAATCTTATCAGATGCCTGAACAGGTGGTCTTTTGGAAGTGGATTACCCCCAAGTTGTTGGGTCTTGCGACACAGACCTCTGTATACCATTGGTCAATTGAAGGTGACTCTGAACCTGTAAAGATGTTTGAGAGAGCAGCGAATTTGGCgaacaatcaaataattaactATCGGTGTGATCCTTCAGAAAAATGGTTGGTCTTGATTGGTATTGCTCCAGGTTCCCCTGAGAGGCCACAATTGGTTAAAGGAAACATGCAACTCTTCTCAGTGGATCAACAGCGCAGCCAGGCTCTTGAAGCACATGCTGCAGCATTTGCTCAATTTAAAGTTCCTGGGAATGAAAATCcttctattttgatttcttttgccACTAAGACACTTAATGCTGGTCAAATTATATCCAAGTTGCATGTTATTGAGTTGGGTGCACAGCCAGGGAAGCCATCGTTTACAAAGAAACAAGCAGATCTTTTCTTTCCCCCAGATTTTGCTGATGATTTTCCAGTCGCCATGCAGATATCCCACAAATACAGTTTGATTTATGTGATTACGAAACTTGGTCTCCTATTTGTCTATGATTTGGAGACAGCTACAGCTGTATATAGGAACAGAATTAGTCCTGATCCTATATTTTTGACATCAGAAGCTACGTCAGTGGGAGGCTTTTATGCCATTAACAGGAGAGGCCAGGTGTTAGTGGCTACTGTTAATGAGCAAACAATCGTGAATTTTGTCAGTGGTCAATTAAACAATTTGGAGCTAGCAGTTAATCTTGCCAAGCGAGGAAATCTTCCTGGTGCTGAGAAACTGGTGGTAGAACGTTTCCATGAACTGTTTGCCCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAGTCTCCGCAAGGAATCCTTCGCACACCTGATACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTATTGCAGTATTTTGGAACACTTCTAACAAGAGGAAAGCTGAATGCCTTTGAGTCGTTAGAATTGTCACGACTGGTTGTGAACCAGAACAAGAAAAATCTTTTGGAGAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTTGTAAAGGTTGGGTACACGCCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGACCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCACAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACCGATCTGTTTCTTCAGAGAAACCTGATCCGTGAGGCAACAGCCTTTCTCCTAGATGTTTTGAAACCAAATCTACCAGAACATGGGTACCTTCAATCAAAGGTGTTGGAGATAAATCTGGTTACTTTCCCAAATGTTGCTGATGCAATTTTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGCATTGCCCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAAGATCCTGACATTCACTTTAAGTACATTGAGGCAGCAGCAAAGACTGGACAAATCAAAGAGGTTGAGCGTGTGACTAGAGAATCAAGTTTCTATGATCCTGAGAAAACGAAGAACTTTCTAATGGAAGCTAAGCTTCCAGACGCACGACCTCTGATTAATGTTTGTGATCGATTTGGATTTGTTCCAGATCTAACACACTATCTATACACAAACAACATGCTTCGCTACATTGAAGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTCGTTGGGCAGCTTCTAGATGATGAGTGTCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCATTACTGCCAGTGGAGCCCCTTGTGGAGGAGTGTGAGAAGAGGTGGAATCGGCTTCGTTTGCTCACTCAGTTTTTGGAACATCTTTCCAGAGTTATGGATTATGTTAATAGACTGGATAATTTTGATGGGCCTGCAGTTGGAGAAATGGCTGTTGAGGCTCAATTATATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTAAATGTTCAAGCAGTCAATGTCTTGCTAGATAATATACATAGCATTGATAGAGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTAAGGGAAGGGCTAGTAAGTGATGCAATTGAGTCATTTATACGAGCAGATGATGCCACACAATTTTTGGAGGTTATCCGTGCTGCTGAAGATGCCAATGTTTACCATGACTTGGTGAGATACTTGCTGATGGTAAGGCAGAAGACAAAAGAACCCAAGGTGGACAGTGAGCTCATTTATGCCTATGCAAAGATTGATAGGCTGAGTGACATTGAGGAGTTCATTCTTATGCCGAATGTAGCCAATCTTCAAAATGTTGGTGACCGATTGTATGATGAAGAACTATACGAGGCTGCCAAAATCATATTTGCCTTTATATCTAACTGGGCCAAGTTAGCAGTTACACTTGTGAAGTTGAAACAGTTCCAAGGTGCAGTTGATGCAGCAAGGAAAGCTAACAGCTCAAAAACATGGAAGGAAGTTTGCTTTGCATGTGTTGATGCAGAGGAGTTCCGTTTGGCCCAGATATGTGGGCTTAACATTATTATTCAgGTAGATGACTTGGAAGAGGTCAGTGAGTATTACCAAAATAGAGGTTGCTTCAATGAGCTAATATCCCTCATGGAGAGTGGTTTAGGATTAGAACGGGCACATATGGGCATCTTCACTGAGTTAGGAGTTCTGTATGCTAGATACCGTCCTGAGAAGCTTATGGAGCATATCAAACTATTTGCAACCCGACTCAATATTCCAAAACTCATTAGAGCTTGTGATGAACAACAACATTGGAAGGAGCTGACCTATTTGTACATCCAATATGACGAGTTTGATAATGCTGCTACAACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTCAAAGTTGCTAATGTAGAGTTGTATTACAAGGCTGTTCACTTCTATTTACAAGAGCATCCGGATCTTATCAATGATGTTCTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGGCTGGTCATCTTCGTCTTGTCAAGCCATACATGGTTGCAGTTCAGAGCAACAATGTGTCTGCTGTTAATGAAGCCCTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGTGAGTCAATTGATTTGCATGATAACTTTGACCAAATAGGCCTTGCACAGAAGGTAGATGGAAGCAGTCCATTGCCTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGGCCTCACAATCTGGAGACCGTGACCTTGCTGAGGAGTTGCTTGTTTATTACATTGATCAGGGAAAGAAGGAATGCTTTGCCTCGTGCCTATTTGTTTGCTATGATTTGATCCGGGCAGACATTGCTCTTGAATTGGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTCTTGCAGTTTATCCGTGAGTACACTGGCAAAGTTGATGAACTGGTGAAGGACAGAATTGAAGCACAGAACCAAGTGAAGGCTAAAGAGCAAGAAGAGAAGGAAGTAATTGCTCAACAGAATATGTATGCTCAGTTGTTGCCTCTTGCTTTGCCCGCACCACCAATGCCTGGAATGGGAGGAGGCTTTGCCCCTCCCCCTCCAATGGGTGGATTGGGGATGCCTCCAATGCCTCCTTTCGGCATGCCACCCATGGGCAGCAGCTACTGA 4131 0.4268 MAAANAPIAMREALTLPSIGINQQFITFTHVTMESDKYICVRETAPQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWITPKLLGLATQTSVYHWSIEGDSEPVKMFERAANLANNQIINYRCDPSEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAAAFAQFKVPGNENPSILISFATKTLNAGQIISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLVATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQSKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQDPDIHFKYIEAAAKTGQIKEVERVTRESSFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRWNRLRLLTQFLEHLSRVMDYVNRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLEVIRAAEDANVYHDLVRYLLMVRQKTKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFATRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKVDGSSPLPCQRRITFTKMPWRQASQSGDRDLAEELLVYYIDQGKKECFASCLFVCYDLIRADIALELAWMHNMIDFAFPYLLQFIREYTGKVDELVKDRIEAQNQVKAKEQEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPMGGLGMPPMPPFGMPPMGSSY 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1610 1376 PANTHER CLATHRIN HEAVY CHAIN 603 746 - -
Ssu9g1610 1376 SUPERFAMILY ARM repeat 891 1209 IPR016024 -
Ssu9g1610 1376 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 736 833 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 481 - -
Ssu9g1610 1376 Pfam Region in Clathrin and VPS 603 706 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 Pfam Region in Clathrin and VPS 841 976 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 Pfam Region in Clathrin and VPS 518 601 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 Pfam Region in Clathrin and VPS 746 826 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 Pfam Region in Clathrin and VPS 1135 1206 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 Pfam Region in Clathrin and VPS 987 1126 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 PIRSF CHC 480 604 IPR016341 GO:0016192|GO:0032051|GO:0071439
Ssu9g1610 1376 PIRSF CHC 3 482 IPR016341 GO:0016192|GO:0032051|GO:0071439
Ssu9g1610 1376 PIRSF CHC 745 1223 IPR016341 GO:0016192|GO:0032051|GO:0071439
Ssu9g1610 1376 PIRSF CHC 1221 1351 IPR016341 GO:0016192|GO:0032051|GO:0071439
Ssu9g1610 1376 PIRSF CHC 602 747 IPR016341 GO:0016192|GO:0032051|GO:0071439
Ssu9g1610 1376 SUPERFAMILY Clathrin heavy-chain terminal domain 5 343 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Ssu9g1610 1376 Coils Coil 1292 1326 - -
Ssu9g1610 1376 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 983 1129 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 837 978 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 SMART CLH_2 837 978 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 SMART CLH_2 573 708 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 SMART CLH_2 983 1129 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 SMART CLH_2 1132 1271 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 SMART CLH_2 713 833 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 Gene3D - 1226 1313 - -
Ssu9g1610 1376 SUPERFAMILY ARM repeat 746 890 IPR016024 -
Ssu9g1610 1376 Pfam Clathrin propeller repeat 154 197 IPR022365 -
Ssu9g1610 1376 Pfam Clathrin propeller repeat 20 56 IPR022365 -
Ssu9g1610 1376 SUPERFAMILY ARM repeat 457 659 IPR016024 -
Ssu9g1610 1376 Pfam Clathrin, heavy-chain linker 344 367 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Ssu9g1610 1376 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1132 1283 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 SUPERFAMILY ARM repeat 345 481 IPR016024 -
Ssu9g1610 1376 PANTHER CLATHRIN HEAVY CHAIN 1 481 - -
Ssu9g1610 1376 Gene3D - 1 377 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Ssu9g1610 1376 PANTHER CLATHRIN HEAVY CHAIN RELATED 481 603 - -
Ssu9g1610 1376 PANTHER CLATHRIN HEAVY CHAIN RELATED 747 1375 - -
Ssu9g1610 1376 PANTHER CLATHRIN HEAVY CHAIN RELATED 603 746 - -
Ssu9g1610 1376 PANTHER CLATHRIN HEAVY CHAIN 481 603 - -
Ssu9g1610 1376 PANTHER CLATHRIN HEAVY CHAIN 747 1375 - -
Ssu9g1610 1376 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 512 708 IPR000547 GO:0006886|GO:0016192
Ssu9g1610 1376 Coils Coil 1172 1192 - -
Ssu9g1610 1376 Pfam Clathrin-H-link 369 434 - -
Ssu9g1610 1376 Gene3D Tetratricopeptide repeat domain 892 1222 IPR011990 GO:0005515
Ssu9g1610 1376 Gene3D Tetratricopeptide repeat domain 745 891 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1610 Ssu-Chr9 52681943 52693642 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1610 K04646 - zju:107413874 1641.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1610 9 52681943 52693642 Ssu6g3053 6 69890793 69904486 PCT