Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1558 ATGATCGGCGTCGGAAAGATCAAGCAGTACAGTAACGTCCTCGACAAGCCCCTCACCAAGGGCAAGCAAGAGGTTAGTTTGAGTGCATTCGCGTTCTTGTTCTCGGAGCTTGTTCAGTACAACCAAACGCAGGTCGACAATATTGGCGAGCTCGAACGAAGACTGGAGGATGCTGGATATGCAGTTGGGGCTCGAGTTCTTGAGCTGCTTTGCCACAGAGATAAGGGAAACAGAAGGGAGACACGGTTGTTGGGTATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGTAGCTGATTCACTGGAGAAAGGAACTGAACACGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAATTCATTTCTATCCCAAAGGACATGGGAACGTTTAACTGTGGAGCATTTGTTGCTGGAATAGTACGGGGCGTTTTGGATGGTGCCGGGTTTCCAGCCGTTGTAACAGCTCATTTTGTGCCCATGGAAGGTCAACAACGACCACGGAcaacaattttgataaaatttgctGAAGAGGTGTTACGAAGAGAAGCAAGATTAGGCTGA 585 0.4513 MIGVGKIKQYSNVLDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGYAVGARVLELLCHRDKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDGAGFPAVVTAHFVPMEGQQRPRTTILIKFAEEVLRREARLG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1558 194 Gene3D Trafficking protein particle complex subunit 3 23 194 - -
Ssu9g1558 194 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 23 192 IPR024096 -
Ssu9g1558 194 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 188 - -
Ssu9g1558 194 PANTHER 41-2 PROTEIN ANTIGEN-RELATED 1 188 IPR016696 GO:0030008|GO:0048193
Ssu9g1558 194 PIRSF TRAPP_1_Trs31 4 194 IPR016696 GO:0030008|GO:0048193
Ssu9g1558 194 Pfam Transport protein particle (TRAPP) component 30 182 IPR007194 -
Ssu9g1558 194 CDD TRAPPC5_Trs31 25 182 IPR016696 GO:0030008|GO:0048193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1558 K20280 - gmx:100527008 382.489