Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1494 ATGGCCtcctttctccttctcctttctcttcttGCAATTACGCTTTTCACCATTTTCCTCCAAATCCAACAAACAACCGCTTCTTCACCCCAACCCCTCCTCGTACTCCCGTTAAAAACCCAAACACTCCCACATGGCTTAGTTTCACTTCCAAGGCCATCATCCACACGTAAGCTCTCATTCCACCACAACGTAACCTTAACCGTCTCACTAACCGTAGGCACGCCTCCACAAACCGTTACCATGGTCCTCGACACAGGCAGCGAACTCTCCTGGCTCCACTGCAAAAAATTCCCAAACACAAACTCCATCTTCGACCCACTCCTCTCTTCCTCCTACACCCCCACACCCTGCACCTCCCCCATATGCAAAACTCGAACCCGAGACTTTTCCATACCCGTTTCCTGCGACATGAAAAAACTCTGCCACGCCACCGTCTCCTACGCCGACGCCACCTCCCTCGAAGGCAACCTCGCCGCCGACACGTTCACCATCGCCGGCTCGGGTCAACCCGGAACCATATTCGGGTGCATGGACTCCGGGTTCAGTTCCAACACCAACGAAGACTCCAAAACAACCGGGTTAATGGGCATGAACCGCGGGTCGCTCTCGCTCGTCACCCAAATGGGGTTTCCGAAATTCTCGTACTGCATCTCCGGCCGCGACGCCTCCGGCGTGTTACTTTTCGGCGACGCCACATTCAAATGGCTCGGTCCCTTGAAGTACACGCCGCTGGTGAAAATGAACACCCCGTTACCCTACTTCGACCGGGTCGCGTACACGGTTCGGTTACAAGGCATTCGGGTCGGGTCGAAACCGTTGCAAGCGCCGAAGACAATTTTCGCGCCGGACCATACCGGGGCGGGGCAGACCATGGTGGATTCGGGCACGCAGTTCACTTTCCTTCTCGGGTCGGTTTACACCGCTCTGAGGAACGAGTTTGTGGAACAAACGAGAGGGGTGTTGACTCTGTTGGAGGATCCGAATTTCGTGTTTGAAGGGGCGATGGACTTGTGTTTTAGGGTAGGAGAGGGTGTGGCTCCGGCGGTGCCCGCCGTGACCATGGTGTTTGAGGGGGCGGAGATGAGTGTCTCCGGGGAGAGGTTATTGTATCGGGTGGGTGGTGACGTGGCGAAGGGGAGTGACGTGTATTGTTTCACGTTTGGGAATTCTGACTTGTTGGGAATTGAGGCGTACGTTATCGGGCATCATCATCAACAGAACGTGTGGATGGAGTTTGACTTGGTCAACTCCAGAGTTGGATTTGCTGACACGAGGTGTGAACTTGCCAGTCAAAGACTCGGCATGGGTCCTTAG 1317 0.5399 MASFLLLLSLLAITLFTIFLQIQQTTASSPQPLLVLPLKTQTLPHGLVSLPRPSSTRKLSFHHNVTLTVSLTVGTPPQTVTMVLDTGSELSWLHCKKFPNTNSIFDPLLSSSYTPTPCTSPICKTRTRDFSIPVSCDMKKLCHATVSYADATSLEGNLAADTFTIAGSGQPGTIFGCMDSGFSSNTNEDSKTTGLMGMNRGSLSLVTQMGFPKFSYCISGRDASGVLLFGDATFKWLGPLKYTPLVKMNTPLPYFDRVAYTVRLQGIRVGSKPLQAPKTIFAPDHTGAGQTMVDSGTQFTFLLGSVYTALRNEFVEQTRGVLTLLEDPNFVFEGAMDLCFRVGEGVAPAVPAVTMVFEGAEMSVSGERLLYRVGGDVAKGSDVYCFTFGNSDLLGIEAYVIGHHHQQNVWMEFDLVNSRVGFADTRCELASQRLGMGP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1494 438 Gene3D Acid Proteases 59 230 IPR021109 -
Ssu9g1494 438 ProSiteProfiles Peptidase family A1 domain profile. 67 423 IPR033121 -
Ssu9g1494 438 Pfam Xylanase inhibitor N-terminal 69 231 IPR032861 -
Ssu9g1494 438 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 436 - -
Ssu9g1494 438 CDD pepsin_A_like_plant 66 427 IPR034161 -
Ssu9g1494 438 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 82 93 IPR001969 GO:0004190|GO:0006508
Ssu9g1494 438 SUPERFAMILY Acid proteases 67 427 IPR021109 -
Ssu9g1494 438 Gene3D Acid Proteases 237 432 IPR021109 -
Ssu9g1494 438 Pfam Xylanase inhibitor C-terminal 259 423 IPR032799 -
Ssu9g1494 438 PANTHER ASPARTYL PROTEASE-RELATED 10 436 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1494 Ssu-Chr9 50657633 50658949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1494 68 428 Miscellaneous Gene Families AT1G44130 24.806 5.55e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1494 - - gmx:100783835 737.258