Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1483 ATGGAGTCCCCTCAAGCGAGGAAATCCGGTCTGAAGCTCCCAGCTGGGATGTCGGGAACCTCACTCCGCCTCGACACGTTCACtgcatcttcttcttcttcttcttttcgtTCCATCTCCAGCATCACTTCTCCCTCTTCGTTTCGTTCCATCTCGAACCTCACTTCTCCATCGAAAGCTAACTCCACGTGCAGTGACAGGTTCATACCGTGCAGGTCGTCGTCGAGGCTGCACACGTTCGGGCTCGTGGAGAAGCCGTCGCCGGCGAAAGAAGGGAGCAACGAGGCGTATTCGAGGTTGTTGAAATCGGAACTCTTTGGATCTGACTTtgtttctccttcttcttcttcccctgCAGGTGCTCCTTCTTCGCCTCTCAGTCCCAGCAAGAACATGCTCCGCTTCAAGACCGAGCATTCCGCGCCGGCATCACCTTACTCGCCCTCCATTTTGGGCCAGCAGAGTGCCTTCTCCTCTGACTCTTCAACCCCGCCCCCCAAACCTCCGAGGAAAGTGCCCAAGACACCCCACAAGGTTCTGGATGCCCCATCACTTCAAGATGACTTTTACTTGAATCTGGTGGACTGGTCCTCTCAAAATGTTCTTGCTGTGGGGCTAGGCACTTGTGTTTATCTATGGAGCGCTTCAAACAGCAAAGTGACTAAGTTATGTGACTTGGGGCCTTATGATGGTGTCTGTTCTGTCCAGTGGACCCGGGAGGGTTCTTTTATATCCGTTGGTACAAACCTTGGTCAAGTTCAGATTTGGGACGGTACTCAGTGTAAGAAAGTCAGAACCATGGGTGGGCATCAGACAAGAACTGGTGTCTTGGCATGGAACTCTCGCACTTTGGCTTCAGGGAGCAGAGACAGGAACATACTTCAGCATGACATGAGGGTTTCAAGTGACTTTGTTAGCAAACTTGTTGGCCACAAGTCTGAGGTATGTGGATTGAAATGGTCCTGTGATGACAGGGAACTTGCTTCTGGTGGCAATGATAATCAGCTACTGGTATGGAATCAGCACTCTCAGCAACCAGCTTTGAGACTTACGGAGCACACTGCAGCTGTGAAGGCTATTGCTTGGTCTCCTCACCAAAGTGGTCTCCTTGTGTCTGGAGGTGGAACTGCTGATAGGTGTATTCGTTTTTGGAACACTACAAATGGCCATCAATTGAACTGTGTTGACACTGGGAGCCAGGTTTGCAACCTTGCTTGGAGTAAAAATGTGAATGAGCTAGTAAGTACTCATGGATACTCTCAAAATCAGATTATGGTGTGGAAATATCCATCATTGGCAAAGGTTGCAACTCTAACTGGCCACAGCATGCGAGTGCTGTACCTCGCAATATCTCCTGATGGTCAGACAATAGTAACTGGCGCAGGGGATGAGACTCTCCGGTTTTGGAATGTTTTCCCATCAATGAAAGCACCTGCCCCGGTTAAAGATACAGGCCTTTGGTCCCTGGGGCGCACCCAAATTCGATGA 1488 0.4866 MESPQARKSGLKLPAGMSGTSLRLDTFTASSSSSSFRSISSITSPSSFRSISNLTSPSKANSTCSDRFIPCRSSSRLHTFGLVEKPSPAKEGSNEAYSRLLKSELFGSDFVSPSSSSPAGAPSSPLSPSKNMLRFKTEHSAPASPYSPSILGQQSAFSSDSSTPPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTREGSFISVGTNLGQVQIWDGTQCKKVRTMGGHQTRTGVLAWNSRTLASGSRDRNILQHDMRVSSDFVSKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPALRLTEHTAAVKAIAWSPHQSGLLVSGGGTADRCIRFWNTTNGHQLNCVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAISPDGQTIVTGAGDETLRFWNVFPSMKAPAPVKDTGLWSLGRTQIR 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1483 495 MobiDBLite consensus disorder prediction 28 66 - -
Ssu9g1483 495 Gene3D - 129 472 IPR015943 GO:0005515
Ssu9g1483 495 MobiDBLite consensus disorder prediction 112 131 - -
Ssu9g1483 495 SUPERFAMILY WD40 repeat-like 170 471 IPR036322 GO:0005515
Ssu9g1483 495 Pfam Eukaryotic translation initiation factor eIF2A 333 469 IPR013979 -
Ssu9g1483 495 ProSitePatterns Trp-Asp (WD) repeats signature. 372 386 IPR019775 -
Ssu9g1483 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 340 - -
Ssu9g1483 495 MobiDBLite consensus disorder prediction 153 178 - -
Ssu9g1483 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 349 IPR001680 GO:0005515
Ssu9g1483 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 438 471 - -
Ssu9g1483 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 438 471 IPR001680 GO:0005515
Ssu9g1483 495 PANTHER PROTEIN FIZZY-RELATED 3 9 495 - -
Ssu9g1483 495 SMART WD40_4 260 297 IPR001680 GO:0005515
Ssu9g1483 495 SMART WD40_4 217 257 IPR001680 GO:0005515
Ssu9g1483 495 SMART WD40_4 343 385 IPR001680 GO:0005515
Ssu9g1483 495 SMART WD40_4 431 470 IPR001680 GO:0005515
Ssu9g1483 495 SMART WD40_4 173 214 IPR001680 GO:0005515
Ssu9g1483 495 SMART WD40_4 301 340 IPR001680 GO:0005515
Ssu9g1483 495 SMART WD40_4 391 428 IPR001680 GO:0005515
Ssu9g1483 495 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 9 495 IPR033010 GO:0010997|GO:0097027|GO:1904668
Ssu9g1483 495 ProSitePatterns Trp-Asp (WD) repeats signature. 457 471 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1483 Ssu-Chr9 50219205 50222744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1483 305 471 Miscellaneous Gene Families AT5G08390 23.295 2.25e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1483 K03364 - gmx:547741 879.396