Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1460 ATGGAAGAAAGCCATCCTCGTGGTCGCAGAAAGCGAGCGCACCCTTCTTCTCCCTCTTCACCAATCCCCAACACCGCCAGGACCCGCCCCAACTTCCCTTCGTTCCAAGACATCCCCGACCTCCCTTCCAACGTCAAATCCCTCTGCCACCTCATCGCCACCACCTCCGCCGCCGCCGTCGAGCAGTCCCTCCAGGACGCCGGCATCCGCGTGGCCCCGGGCGACGTCGAGCAGGTCCTCAAACTCTCCTACGGCTTCCCCGGCCAGGCCGTCAAGTTCTTTCGCTGGAGCGGCCGCCACCTCAACGACAACCACACCCCTTACTCCTGGAACCTCGTCGTGGACCTCTTGGGTAAGAACCGCTTCTTCGACGCAATGTGGGACGCCATTAAGTCCATGAACAAAGAAGGGTTGCTCTCCCTCGCGACCTTCGCCTCCGTTTTCAGCAGCTACGTCGCCGCGGACCGTGTCCGCGAAGCCGTTGCGGCGTTCGAGGTCATGGAGAATTACGGCTGTGTCAGGGACGTTGTTGCTCTGAATTCGCTGTTGAGTGCTATTTGTAGGGATGGTAGGACTGTAGATGCTTGTGACTATTTACAGGTCGCTAAGAAATTTGTCCGGCCGGATGCCGATAGTTACGCGGTTTTGATGGAGGGGTGGGAGGGGGAGAAGGGTGTTGGTGGTGCCAAGGAGACGTTTGCTGAGATGGTGATTGAGATTGGTTGGGATCCTGCGAATGTGCCGGCCTATGATTCGTTCTTGTGTACCCTTGTTAGAGGCCCGGATGGGTTGCTCGAGGCGATTAAGTTTGTTGATTCCATGAGAGACAGGAGGTGTTACCCTGGGGTGAGGTTTTTGAAGGCTGCGTTGGACGAGTGTCTCAAGTGTCATGACATTCGGACGGCCGAGTTTTTCTGGGAGGTGATGGTGGTGGGGAAGGTCTTGCAGCCCACCACCGAGATGTACAATTCGATGATTGTCTTGTACTGCTATCGGAGTGACACCGAGGCTGCTAGGAGGATGCTTGAGGAGATGGTTTACCATGGGGCTTTCCCGGATGGGACCACTTATAACTTGTTGTTTCAGTTCTTGATCAAAGGGAGGAAGTTGAGGGAGGCTTCGGCGGTGTTCGCTGAGATGGTGAAGAATGAGTGTGTGCCGGAGCAGGCTAATTGTGACGCGGCGGTTAAGGCGTATCTGGATAATGGGGACCCTTTTATGGCGATGAAAGTTTGGAAGTGCCTGGTGGAGAATTATCAGAAGGATTTGGAGCGGACGGCGAATTTTCTGGTTGTGGGGCTTCGCGATCTGACCAGGGTCCCAGAGGCGGTTAAGTATGCTGAGGATATGATTGGCAGGGGAATCAGGTTGTCCACTTCCACATTGTCGAAGCTGAGACAGAGCCttgtcaaagaaagaaaagagtttGTGTATGAAGAACTTTTGAGAAAGTGGAAATCTCATTAG 1467 0.5412 MEESHPRGRRKRAHPSSPSSPIPNTARTRPNFPSFQDIPDLPSNVKSLCHLIATTSAAAVEQSLQDAGIRVAPGDVEQVLKLSYGFPGQAVKFFRWSGRHLNDNHTPYSWNLVVDLLGKNRFFDAMWDAIKSMNKEGLLSLATFASVFSSYVAADRVREAVAAFEVMENYGCVRDVVALNSLLSAICRDGRTVDACDYLQVAKKFVRPDADSYAVLMEGWEGEKGVGGAKETFAEMVIEIGWDPANVPAYDSFLCTLVRGPDGLLEAIKFVDSMRDRRCYPGVRFLKAALDECLKCHDIRTAEFFWEVMVVGKVLQPTTEMYNSMIVLYCYRSDTEAARRMLEEMVYHGAFPDGTTYNLLFQFLIKGRKLREASAVFAEMVKNECVPEQANCDAAVKAYLDNGDPFMAMKVWKCLVENYQKDLERTANFLVVGLRDLTRVPEAVKYAEDMIGRGIRLSTSTLSKLRQSLVKERKEFVYEELLRKWKSH 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1460 488 MobiDBLite consensus disorder prediction 1 36 - -
Ssu9g1460 488 MobiDBLite consensus disorder prediction 17 36 - -
Ssu9g1460 488 PANTHER OS02G0711100 PROTEIN 5 487 - -
Ssu9g1460 488 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 5 487 - -
Ssu9g1460 488 TIGRFAM PPR: pentatricopeptide repeat domain 356 387 IPR002885 -
Ssu9g1460 488 TIGRFAM PPR: pentatricopeptide repeat domain 321 346 IPR002885 -
Ssu9g1460 488 TIGRFAM PPR: pentatricopeptide repeat domain 143 176 IPR002885 -
Ssu9g1460 488 Gene3D Tetratricopeptide repeat domain 206 431 IPR011990 GO:0005515
Ssu9g1460 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Ssu9g1460 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Ssu9g1460 488 Pfam PPR repeat 143 172 IPR002885 -
Ssu9g1460 488 Pfam PPR repeat 108 138 IPR002885 -
Ssu9g1460 488 Pfam PPR repeat family 317 363 IPR002885 -
Ssu9g1460 488 Gene3D Tetratricopeptide repeat domain 82 196 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1460 Ssu-Chr9 49864332 49865798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1460 93 463 Miscellaneous Gene Families AT4G11690 22.995 8.33e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1460 - - pvu:PHAVU_001G231300g 824.313