Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1456 ATGTGCCATGATGCAATATTGCTAAACCACCTTCTGAAGGTATATGATTATTTAGTTAACACTGCTGCCTTTGTTCAAACAAGAGAGAACATCAATGAGTTCTTGACAAGTGTTAAACAACATGACCTGGCAAAAGCTGAGGTTCTGAACATATTAAACACTAGGCCAGCTGCGGACGTTGAAATATTCCCAATCATAGAGAATTCTGAGGAGCGTTTTCCAGATGAAGAGATCACTGAAATAGTAGAGCTGGTGAAGAAGACATTGCCACCGCCACTCAATATGAAGCAGGAAGAAATCCCCAAGGGTGACAAAGAAACCGCAACACTGAAATATGAAAAAGGTAATGAGATTAGTCAAGACCAAAATGAAGGTGGAGAACAAATGGACACTAGTTAA 399 0.3985 MCHDAILLNHLLKVYDYLVNTAAFVQTRENINEFLTSVKQHDLAKAEVLNILNTRPAADVEIFPIIENSEERFPDEEITEIVELVKKTLPPPLNMKQEEIPKGDKETATLKYEKGNEISQDQNEGGEQMDTS 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1456 132 MobiDBLite consensus disorder prediction 98 120 - -
Ssu9g1456 132 Gene3D - 5 88 IPR038324 -
Ssu9g1456 132 MobiDBLite consensus disorder prediction 93 132 - -
Ssu9g1456 132 Pfam RNA polymerase Rpb4 12 88 IPR005574 GO:0006352|GO:0030880
Ssu9g1456 132 SUPERFAMILY HRDC-like 11 90 IPR010997 GO:0000166|GO:0044237
Ssu9g1456 132 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC9 13 106 - -
Ssu9g1456 132 PANTHER CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN 13 106 IPR038846 GO:0005666|GO:0006384
Ssu9g1456 132 SMART rpol4neu2 1 92 IPR006590 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1456 Ssu-Chr9 49825137 49829863 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1456 K25304 - gmx:100526847 190.274