Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1439 ATGTCTCTGCGTGTGGCGGCAGCAAATTTGCTCAAAAAACTTCGCTTTCCTGCTTCCAATGCCTTCCCTGCCTCTACAGTAACCAAAAATGCATTGCCCATCTCAATTTCCGGTAAACTCAAACTTTCCCGTTGGTGCCAAACTGGTgcatatggttggaagataaatCTTAGGGATCCTTGTCTATGGATTGTTATATCTGGACATGTAGCAATGACTTTAGGAATTAGTGCCAGCACTGTATTAGCAGAAGATGCAACTGAAGCATCTTCTGATAATGACCCGGGGGATAACTTAATTGGATTAAGAAAAATTGAGGATGGCTCTGTAGTATCAAACATACATACAGCAAAATGGAGAGTCTTTACAGATAAAGCGAGAGAATTTTTTCTACAGGGAAAACTAGATGAAGCTGAAAAACTCTTCCTTTCTGCTATACAAGAAGCTAAAGAAGGTTTTGGCGAGCAAGATCCACATGTTGCTTCTGCATGCAACAATCTGGCAGAATTGTACAGGGTCAAAAAGGCATTTGACAAAGCAGAACCATTATATTTGGAGTCTATCAACATACTAGAGGAATCTTTTGGTCCTGATGATGTACGTGTTGGGGTTGCTGTTCACAACCTTGGGCAGTTCTACCTTGGACAGCGGAAGTTGGAAGAAGCCCGTATTAGCTATGAGcGTGCTTTGAAGATAAAAAGGCGTGTTCTGGGGTATGGCCATTCAGAATGTTCAGATACAATGTATCATTTAGGAGTGGTGCTgtatcttcagggaaaagaaAGGGATGCTGAGGCCCTTATTAAGGACTCTATAAGGATGCTAGAGGAAGGTGGTGAAGGGGAGTCATTTGTATGCATTAGAAGACTACGATACCTCTCACAGATATATTTGAAGTCACATCGAGTTGCTGAAGCTGAGATGGTCCAGAGAAAGATCCTGCATGTTATGGAATTGTCAAAGGGATGGAATTCCTTGGACACAGTTATTGCAGCTGAATCTTTGGCTCTGACCCTGCAAGCATCTGGCAATACAAAAGATTCAAAAGAGCTTCTTGAAAGATGTCTTAATGTCCGGAAGGACTTACTTCCCAGTGACCATATTCAGATTGGCGCAAACTTACTTCATCTAGCAAGAGTGGCAATGCTTGATTGCAGTCAACATAAAAAGTTGGATGTTTCTAGAGCTAAAACTGATCTTGATATGGCAAAGGATCATTTGCATAATTCCATAAGGATTGCACGTCAATGTTTAGAGAAGGTATTGAAACAAAAGGACAagttgaagaaatacaataagcCTGGAGATTCTAGAAAAGAAGGCCAAGCAGCTCTGGCCATATTGTTGCAATCACTCAATACATTGTCATCGGTGGAGTTAGATAAGCAAGAATTGCAGGAGATTCAGGAAAGGGATATTAACCTCGAGGCTCAGGAGGCACTTCTTCAATGCGTTTCTGCTTACAAGGAGTTTGTATATGAGAGGTCAATTGCTGATGCCCCTGAAATAAAGAACGAGTATCTTTCATGTTTAAAGCGCGCTCAAAATTTGCTTGGTCATAAACTTGATCAAGGGCCAACCAAACAAGGATTTCCGATAGCTGAATCTTga 1611 0.3998 MSLRVAAANLLKKLRFPASNAFPASTVTKNALPISISGKLKLSRWCQTGAYGWKINLRDPCLWIVISGHVAMTLGISASTVLAEDATEASSDNDPGDNLIGLRKIEDGSVVSNIHTAKWRVFTDKAREFFLQGKLDEAEKLFLSAIQEAKEGFGEQDPHVASACNNLAELYRVKKAFDKAEPLYLESINILEESFGPDDVRVGVAVHNLGQFYLGQRKLEEARISYERALKIKRRVLGYGHSECSDTMYHLGVVLYLQGKERDAEALIKDSIRMLEEGGEGESFVCIRRLRYLSQIYLKSHRVAEAEMVQRKILHVMELSKGWNSLDTVIAAESLALTLQASGNTKDSKELLERCLNVRKDLLPSDHIQIGANLLHLARVAMLDCSQHKKLDVSRAKTDLDMAKDHLHNSIRIARQCLEKVLKQKDKLKKYNKPGDSRKEGQAALAILLQSLNTLSSVELDKQELQEIQERDINLEAQEALLQCVSAYKEFVYERSIADAPEIKNEYLSCLKRAQNLLGHKLDQGPTKQGFPIAES 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1439 536 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 521 - -
Ssu9g1439 536 SMART tpr_5 329 362 IPR019734 GO:0005515
Ssu9g1439 536 SMART tpr_5 203 236 IPR019734 GO:0005515
Ssu9g1439 536 SMART tpr_5 161 194 IPR019734 GO:0005515
Ssu9g1439 536 SMART tpr_5 245 278 IPR019734 GO:0005515
Ssu9g1439 536 SMART tpr_5 119 152 IPR019734 GO:0005515
Ssu9g1439 536 Pfam Tetratricopeptide repeat 130 193 - -
Ssu9g1439 536 Pfam Tetratricopeptide repeat 207 277 - -
Ssu9g1439 536 SUPERFAMILY TPR-like 242 362 IPR011990 GO:0005515
Ssu9g1439 536 Pfam Tetratricopeptide repeat 333 368 - -
Ssu9g1439 536 Gene3D Tetratricopeptide repeat domain 121 284 IPR011990 GO:0005515
Ssu9g1439 536 Coils Coil 458 478 - -
Ssu9g1439 536 Gene3D Tetratricopeptide repeat domain 286 491 IPR011990 GO:0005515
Ssu9g1439 536 SUPERFAMILY TPR-like 119 264 IPR011990 GO:0005515
Ssu9g1439 536 ProSiteProfiles TPR repeat profile. 203 236 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1439 - - ccaj:109796654 917.531