Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1109 ATGGAAATTGAGATTGAGGATGAGATTGTGGGCATGTCAATGTCACCCCCATTAGTTGGTTCCATTAACAATGACTTTTATCACAACAAGGAGTTCATGTCTCAGACGTATCTTCAGAATAAGTACTCAGAGATTTACATAGAAATTGAAGGTTCCAATTTTGAACAAAATCGCCCCCTCCCCATATTTCTTAAGTTTGAAGATGTGGAGTATAAGGTGAGAAATAGCCAAGCAGGTTCTAGTAATCTTGTGAAGACAATGGTGTCAAACGTATCCACACAACGCACTATGGAAGAAGATAggtataagaaaattttgaaggGCATCACAGGAAGCGTAGGCCCTGGTGAAATTCTTGCTCTGATGGGTCCTTCTGGCAGTGGGAAGACAACCTTGTTGAGAGTTATAGGAGGaagattagttgacaatgtaaagggAAAAGTAACTTACAATGATGTTCATTATACTCCAGCTCTCAAGAGGAGGATTGGATTTGTGACACAAGAGGATGTGCTTTTCCCACAATTAACTGTTGAAGAAACTTTAGTCTTCTCTGCATTCTTGAGGCTGCCAACCAATATGAGCAAGCAGCAAAAATATGCAAAAGTGGATACCACTATCAAGGAGCTAGGCCTTGAAAGATGTCGCCACACAAAAATAGCTGGAGGATATCTCAAAGGTATCTCAGgaggagaaaggaagagaacCAGCATAGGCTATGAAATTCTAGTTGATCCTTCACTGCTACTACTTGATGAACCAACTTCTGGCCTTGATTCCACCTCAGCAAACAAACTCCTTCTTACTCTTAAAGGACTTGCTAAGGCTGGAAGGACCATAATCACAACAATACACCAACCATCCAGCAGAATCTTTCACATGTTTGACAAGCTTCTTCTGATATCAGAAGGCTATCCTATTTACTACGGGAAGGCTAAAGAAACAATGGAGTACTTTTCATCCTTGAGATTCACCCCGCAAATATCAATGAATCCTGCAGAATTCTTGCTTGACTTGGCAACTGGACAAGTGAATGACATAAGTGTTCCAACAGATATCTTGCGAGATCAAGAATCTGGTGACCCTTCAAAAGCTGTTACTGAATATCTACAACTCAAATACAAAGCTCTACTGgagccaaaagaaaaagaagagaaccATAAAGCAGCAAACACCCCAGAACATCTTCAACTAGCCATTCAGGTTAAGAAGGAGTGGACATTGAGTTGGTTGGACCAATTTGTGATTCTTTCCTGGAGAACATTCAAAGCAAGAAGCAAGGACTATTTTGATAAGCTAAGACTAGTTCAAGCACTTGGGATTGCACTTTTGTTGGGGCTACTTTGGTGGAAATCTTCAACCAATACTGAAGCTCAACTCAGAGATCAGGTTGGTTTAGCATTCTACATCTGTATATTCTGGACATCTTCAAGTATTTTTGGAGCAGTTTATGTCTTTCCATTTGAAAAGTACTACTtgataaaagaaaggaaagctGACATGTACAGATTAAGTGTATACTATGCATGTAGCACTCTATGTGACATGGTGGCACATGTTTTCTATCCTACTCTTTTCATGGTCATATTGTACTTCATGGCTGGCTTTAAGAGGACTGTTGCTTGCTTCTTCCTGACACTATTTACTATTCTGTTAATAGCTATAACAAGTCAAGGGGCAGGAGAAATGTTTGGAGCTGCAGTTATAAGTATTAAAAGAGCAGGGACGGTTGCTTCTTTGATACTAATGTTATTCCTTCTCACAGGTGGCTACTATGTCCAGTCTCATTTGGGTAAGACACTCACACCCATTTCCATTGTGCAGCACATACCAAAGTTCATGAGGTGGTTGAAGTATTTGTCCTTCATGTACTATGGTTTCAGGCTTCTCCTAAAAGTTCAGTATTCAGGAGACCAACTATATGATTGTGAAAGCAAGGGAGGGTGTAGAACCCTGCAGAGTTCACCTACATTTGACGTTGTAAACTTGAAAGGTGGATTAAAAGAAGTATGGATTCTGCTAGCGATGGCCTTAATCTTTCGGTTGTTAGCTTACTTGTGCCTCCGTAGAAGAATTGATAATTGCAACTAA 2091 0.3826 MEIEIEDEIVGMSMSPPLVGSINNDFYHNKEFMSQTYLQNKYSEIYIEIEGSNFEQNRPLPIFLKFEDVEYKVRNSQAGSSNLVKTMVSNVSTQRTMEEDRYKKILKGITGSVGPGEILALMGPSGSGKTTLLRVIGGRLVDNVKGKVTYNDVHYTPALKRRIGFVTQEDVLFPQLTVEETLVFSAFLRLPTNMSKQQKYAKVDTTIKELGLERCRHTKIAGGYLKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLLTLKGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGYPIYYGKAKETMEYFSSLRFTPQISMNPAEFLLDLATGQVNDISVPTDILRDQESGDPSKAVTEYLQLKYKALLEPKEKEENHKAANTPEHLQLAIQVKKEWTLSWLDQFVILSWRTFKARSKDYFDKLRLVQALGIALLLGLLWWKSSTNTEAQLRDQVGLAFYICIFWTSSSIFGAVYVFPFEKYYLIKERKADMYRLSVYYACSTLCDMVAHVFYPTLFMVILYFMAGFKRTVACFFLTLFTILLIAITSQGAGEMFGAAVISIKRAGTVASLILMLFLLTGGYYVQSHLGKTLTPISIVQHIPKFMRWLKYLSFMYYGFRLLLKVQYSGDQLYDCESKGGCRTLQSSPTFDVVNLKGGLKEVWILLAMALIFRLLAYLCLRRRIDNCN 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1109 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 692 - -
Ssu9g1109 696 SMART AAA_5 115 306 IPR003593 -
Ssu9g1109 696 CDD ABCG_EPDR 102 310 - -
Ssu9g1109 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 321 IPR027417 -
Ssu9g1109 696 Gene3D - 87 323 IPR027417 -
Ssu9g1109 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 2 692 - -
Ssu9g1109 696 Pfam ABC-2 type transporter 285 346 IPR043926 GO:0140359
Ssu9g1109 696 Pfam ABC transporter 106 256 IPR003439 GO:0005524
Ssu9g1109 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 86 328 IPR003439 GO:0005524
Ssu9g1109 696 Pfam ABC-2 type transporter 413 635 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1109 Ssu-Chr9 42737158 42741097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1109 104 289 Calmodulin-binding Proteins AT2G36910 30.622 1.02e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1109 K05681 - gmx:100806094 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1109 9 42737158 42741097 Ssu9g1109 9 42737158 42741097 ECH