Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1105 ATGTCGGAGGGAGACGAATCAATGTCAGAACGTGAAGAACAAGAACAGAGAAATGGATCAGGACTTGATTACATTATGAGCTTGGAGAGTGTTCCATCAAGGCTCCCTCCACACCTCGAACTTTTCAAGACACGTGTTCTTTGCACCAACGATGCTCCTCTGCATACAGATACTATACAATATTCCGGTGCTTATGCTATTTTGGGAGTTGATAATAGTGTGCGCTTGGATAACTTCTGTGAAAACTTCAAGGTTGAAGTGAAGCGGCTTACGCATAGTGACATGGAGTTTGATATGATTGGTATTGACCCAGCAATTGCCAATGCTTTTCGAAGAATCCTTATAGCAGAGGTTCCAACAATGGCTATTGAAAGAGTATATATAGCAAACAATACATCAGTTGTACAAGATGAAGTTCTTTCCCATAGATTGGGTCTCGTTCCAATTCGTGCTGATCCCAGGCTATTTGAATATCCAGAAAATGCAGGAGATGACAAGAATGAAAAGAACACCATTGTCTTCAAGCTACATGTTCGTTGTCAAGTGGGTCAACCTCGTATTACTGTGAAATCAGATAAACTAAAGTGGTTACCTAATGGGAGTGAGCTTCCCTGTGAAGATGCCAAACCAAACGCAGgttcaaaaccaaaaacatttaCATCTTTCACTTGCAGCCAAGATTCACTTCCTGAATTTTCCAGCAATCCACCTGGTCTTACGTATTCAGATATTATATTAGCCAAGCTTGGTCCTGGTCAGGAAATTGAACTTGAAGCGCATGCAGTTAAAGGCATTGGTAAGACGCATGCAAAATGGTCACCGGTTGCCACTGCTTGGTATCGGATGCTTCCAGAGGTTGTACTCTTGGAAGATGTTGAGGATGAGCTGGCTGaagagttgaaaaataaatgtccAGTTAATGTGTTTGATATTGAAGACATTGGAAAAGGTAGAAGGGCAAAAGTAGCCAGACCACGGGATTGTACTTTGTGTAGGGAATGCATCAGAGGGGGCAAAGAATGGGAAGATCGTGTATCACTACGTCGTGTTAAAGATCATTTCATTTTTACTATTGAATCAACTGGAGCATTACCCCCTGAAGTGTTATTTACTGAAGCTGTGAAGATTCTGGAAGATAAATGTGAACGTGTGATTACTGAGCTTTCTTGA 1170 0.4043 MSEGDESMSEREEQEQRNGSGLDYIMSLESVPSRLPPHLELFKTRVLCTNDAPLHTDTIQYSGAYAILGVDNSVRLDNFCENFKVEVKRLTHSDMEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQDEVLSHRLGLVPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKLKWLPNGSELPCEDAKPNAGSKPKTFTSFTCSQDSLPEFSSNPPGLTYSDIILAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLEDVEDELAEELKNKCPVNVFDIEDIGKGRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKDHFIFTIESTGALPPEVLFTEAVKILEDKCERVITELS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1105 389 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 108 148 IPR001514 GO:0003677|GO:0003899|GO:0006351
Ssu9g1105 389 SUPERFAMILY RBP11-like subunits of RNA polymerase 81 388 IPR036603 GO:0006351|GO:0046983
Ssu9g1105 389 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 119 274 IPR036643 -
Ssu9g1105 389 Gene3D - 85 380 IPR036603 GO:0006351|GO:0046983
Ssu9g1105 389 MobiDBLite consensus disorder prediction 1 18 - -
Ssu9g1105 389 PANTHER DNA-DIRECTED RNA POLYMERASE 25 389 - -
Ssu9g1105 389 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 96 381 IPR011263 GO:0003899|GO:0006351
Ssu9g1105 389 SMART rpoldneu2 94 387 IPR011263 GO:0003899|GO:0006351
Ssu9g1105 389 MobiDBLite consensus disorder prediction 1 21 - -
Ssu9g1105 389 CDD RNAP_I_II_AC40 83 387 IPR033901 GO:0001054|GO:0001056
Ssu9g1105 389 Pfam RNA polymerase Rpb3/RpoA insert domain 126 273 IPR011262 GO:0003899|GO:0006351|GO:0046983
Ssu9g1105 389 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 84 388 IPR022842 GO:0003899|GO:0006351
Ssu9g1105 389 Gene3D - 120 270 IPR036643 -
Ssu9g1105 389 PANTHER BNAA01G22480D PROTEIN 25 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1105 Ssu-Chr9 42707778 42713383 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1105 K03027 - gmx:100786622 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1105 9 42707778 42713383 Ssu9g1105 9 42707778 42713383 ECH