Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1093 ATGTCGGAAAAGGGTCGGCCACTACCAAAATTTGGTGAATGGGATGTCAATGACCCAGCCTCAGCTGAGGGGTTcacagtgatttttaataaggCTAGGGATGAGAAAAAGACAGGTGGCAATCCTGAGTCACCAGCAAAGACTGCCACTGATCCTCATAGCAAACCTGCAATAGATCCTGGAAAAACTCAGACTAAAAAATGGTTTTGCTGCATGCAAAACCCTGCTGCCGAATCATAG 240 0.4333 MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPAKTATDPHSKPAIDPGKTQTKKWFCCMQNPAAES 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1093 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Ssu9g1093 79 MobiDBLite consensus disorder prediction 30 66 - -
Ssu9g1093 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 78 IPR040387 -
Ssu9g1093 79 PANTHER RPM1-INTERACTING PROTEIN 4-LIKE 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1093 Ssu-Chr9 42513576 42516402 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1093 - - gmx:100305826 168.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1093 9 42513576 42516402 Ssu9g1093 9 42513576 42516402 ECH