Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1091 ATGAAACCACGTAAATTTCCTTCTCCGGCACTCTCACGTGCGCTCGCACGTGCCCTAagctccaccaccaccaccacgacgCAATGTGGATCGGCGTTTCCTTTGAAGACCGTTACCACCGCGAACTTTGAACCCTCGCTGGCGGAGCTCCAGCGGCTCGTCCGGTCGTCGGACTTCGTGGCCATCGACCTCGAGATGAGCGGCGTGACGAGCGCTCCCTGGCGCGAGTCCTTCGAGTTCGACCGCTCCGACGTGCGCTACCTCAAGGTCCGAGACTCCGCCGCCAAGTTCGCCGTCGTTCAATTCGGCGTTTGCCCCTTCCGTTGGGATCCCTCCAACCACTCCTTCGTCGCGTATCCGCACAATTTCTATGTTTTTCCACGTCAGGAGCTTGCAGGTTTGGGTCCATGTGATGAATTTCTCTGCCAGACCACTTCATTGGATTTCTTGGCTAAATACCAGTTTGATTTTAATGCATGCATACATGAAGGAATATCTTATTTATCCAGAGAGCAAGAAAGGGAAGCATTAAGGAGTTTGAATTCTACACATGATAGTGAGTGTTCAGacatttgtaaattaaaagatGTTAGGGACATACCCTTGATCAGCATGGCAGACATTTTGTTCACAGCACGGATGAAAGATAAATTCAGTGAATGGCGTGATGGGTTATTACTGGAGCAAAATCAAGAAGACCAAATTCAAGGAATTTCAAAAGACTCAAAATTTGAAGTGATTTTCTTTGAGATGCATCCAGCGCTTAGGCTTAATGGATTCACCTCTCACCAGCTTAAATTGATTCAGTTGGTCATCAGAAAACACTTCAAAGATCTTTCTTATGTCAGTGTGAATTGTGAGGCTTCTGGTTCACAACATTTAGTTGTATATACAGAGTCAAAGGATGAATTAAACTTACTTCTGAAGAAGGTGGAAGAAGAAAATCACAGGGCAGCAGAGACAAAGATCCAAGCTGCCGTGGGATTTCGCCATGTTATTGATCTCCTTTCATCGGAACAGAAGTTGATAGTTGGTCACAATTGTTTTCTAGATATTGCTCATGTCTACAGCAAATTTATAGGCCCTCTTCCACGGACTCCTGAAGAGTTTGTTGCCTCTGTTAACAAGTGCTTTCCGTTCATTGTTGACACCAAAATACTCTTGAACACTAATTTTATACTCCAAGAAAGGATGAAAAGGTCCAGAAAATCACTGGCCTCTGCATTCACTTTATTTTGTCCACAAGTTGCGGCTGGCTCCAGAAGCACTGATCTAGGTTCACTCTCACATGTGAAAGTGGATGTTGAAGTTGATGATTCGAGATCATCCAACTGGAACCCTGGAGGCACGCATGAGGCAGGATATGATGCATTCATGACTGGATGCATCTTTGCCCAGTTATGCAGTGATTTAGGCATCGATTTTAAACTCCATGAATCTTCAAAACAATTAGCCCTCAATGAGAAACTGCAGAAGTACGTTAATCATCTATATCTTAGTTGGATGCATGGGGACATTATTGATCTAAGTACTGGTAATAAGGTTGCAGATTCTTCACCCAGCTATGGCCTCAAGAAGCGGTAccgaaaaattttgtttgagaaCATTGTTATTATTTGGGGATTTCCTTCTAAGCTGAAGGCAAATGAAGTAAGAGAGTGCATATCTAAAGTATTTGGACCAGCTTCTGTAGTTTCTGTCTTCCACTTGGATGCAACTGCAGTATTTGTTCAGTTTAGCAAAACTGAACTAGTTTCTGATTTTCTTTCAGTGAAGGACACCTTAGAGAGAGGTGATGGTGCAATCTTGGTTTTGCATCCGCTGGCAAAACTTTTGGAAGGTGGAAATACATGTGCTGCCAATTATGATACTTATAAAGAAATATGTGGTTCACCCTTATCAGAAGGTCTGTTTGCTGATCAGGCAAAGGCAGTTGGTATAAAGTGGAAGACCAAATTGACAGAATACAAGGCAGCATTGGGGGACGAGGAACATGAAAATCCAAGTGTACAAGGTGATGTAAATACAGCTATGAAGAATGTAGAAAGGACTAAGCCAAACACAATTGATCAGTTAAGAAATGCTCCATCTCGTGAGCAAGTCTCATCTTTTGAGATTGAAGATTCTTCCTGTGTTGCAGAAGCCAACTTGTGA 2154 0.422 MKPRKFPSPALSRALARALSSTTTTTTQCGSAFPLKTVTTANFEPSLAELQRLVRSSDFVAIDLEMSGVTSAPWRESFEFDRSDVRYLKVRDSAAKFAVVQFGVCPFRWDPSNHSFVAYPHNFYVFPRQELAGLGPCDEFLCQTTSLDFLAKYQFDFNACIHEGISYLSREQEREALRSLNSTHDSECSDICKLKDVRDIPLISMADILFTARMKDKFSEWRDGLLLEQNQEDQIQGISKDSKFEVIFFEMHPALRLNGFTSHQLKLIQLVIRKHFKDLSYVSVNCEASGSQHLVVYTESKDELNLLLKKVEEENHRAAETKIQAAVGFRHVIDLLSSEQKLIVGHNCFLDIAHVYSKFIGPLPRTPEEFVASVNKCFPFIVDTKILLNTNFILQERMKRSRKSLASAFTLFCPQVAAGSRSTDLGSLSHVKVDVEVDDSRSSNWNPGGTHEAGYDAFMTGCIFAQLCSDLGIDFKLHESSKQLALNEKLQKYVNHLYLSWMHGDIIDLSTGNKVADSSPSYGLKKRYRKILFENIVIIWGFPSKLKANEVRECISKVFGPASVVSVFHLDATAVFVQFSKTELVSDFLSVKDTLERGDGAILVLHPLAKLLEGGNTCAANYDTYKEICGSPLSEGLFADQAKAVGIKWKTKLTEYKAALGDEEHENPSVQGDVNTAMKNVERTKPNTIDQLRNAPSREQVSSFEIEDSSCVAEANL 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1091 717 SUPERFAMILY Ribonuclease H-like 36 476 IPR012337 -
Ssu9g1091 717 Coils Coil 294 321 - -
Ssu9g1091 717 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 34 653 - -
Ssu9g1091 717 Gene3D - 295 513 IPR036397 GO:0003676
Ssu9g1091 717 Gene3D - 37 207 IPR036397 GO:0003676
Ssu9g1091 717 Pfam CAF1 family ribonuclease 38 464 IPR006941 -
Ssu9g1091 717 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 34 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1091 Ssu-Chr9 42495825 42500938 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1091 K01148 - gmx:100784997 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1091 9 42495825 42500938 Ssu9g1091 9 42495825 42500938 ECH