Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1087 ATGTCAGTCTCAGCTAGTCCAGCACCACTGTTAGGGGACCGACCGTGTGAAAATGGATTTGAATGTGTTAAAATTCTCCCAGCCACCAATGATGCACATGGAGGAGTCATTGTGGACTTAAAGGAGGTTATGGATTCTGAAGTTTTTGCTACTTTGCTTAGATCTTCACTTTTACATTGGAAGCAACAGGGACAAGATGGTGTTTGGATCAAATTACCTATCGAACTTGTTAATCTTGTTGAAATTGCAGTTAAGGAGGGTTTCTGGTACCACCATGCAGAGCCAAACTATCTAATGCTAGTTTACTGGATTCCCAAAACAGGCTGCACAATACCTCCAAATGCTTCCCATCGTGTAGGAGTTGGCGCCATTGTCTTAAATGATAAGAAAGAGGTGCTTGTAGTCCAGGAGAAAAGAGGTGGATTCCATGGGATTGGTGTTTGGAAGATACCTACTGGAGTAGTTGATGCAGGTGAGGAGATTTTTGAAGCAGCTATAAGAGAAGTAAAAGAAGAGACAGGAaTTGATACAGAATTTGTGGAAGTACTAGCATTCAGACACACACACAATTCATTCTTTGGAAAATCAGATCTATCTTTTGTTTGCATGCTGCGTCCTCTTTCCTTTGACATCAAAAGGCAAGAACTGGAAATTGAGGCAGCTCAGTGGATGCCGTTCGAGGAATTTGCTGATCAACCTTTTAATCAGATGCATGAACCCTTCAAGTACTTGATTGAATTATGCTCGGCAAAGGTGGAAAATGTCTATAATGGATTCTCCCCGCGGCCTGTCTCATCATATTTCGTGGAGGAGTTGAATTATCTATATTTGAATAACCATGGCCTGGACAAGTCGTCTTAA 861 0.417 MSVSASPAPLLGDRPCENGFECVKILPATNDAHGGVIVDLKEVMDSEVFATLLRSSLLHWKQQGQDGVWIKLPIELVNLVEIAVKEGFWYHHAEPNYLMLVYWIPKTGCTIPPNASHRVGVGAIVLNDKKEVLVVQEKRGGFHGIGVWKIPTGVVDAGEEIFEAAIREVKEETGIDTEFVEVLAFRHTHNSFFGKSDLSFVCMLRPLSFDIKRQELEIEAAQWMPFEEFADQPFNQMHEPFKYLIELCSAKVENVYNGFSPRPVSSYFVEELNYLYLNNHGLDKSS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1087 286 CDD Nudix_Hydrolase_12 117 248 - -
Ssu9g1087 286 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 118 257 - -
Ssu9g1087 286 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 202 226 IPR003293 -
Ssu9g1087 286 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 114 132 IPR003293 -
Ssu9g1087 286 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 76 94 IPR003293 -
Ssu9g1087 286 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 174 197 IPR003293 -
Ssu9g1087 286 ProSiteProfiles Nudix hydrolase domain profile. 116 248 IPR000086 -
Ssu9g1087 286 PANTHER NUDIX HYDROLASE 2 19 285 - -
Ssu9g1087 286 PANTHER NUDIX HYDROLASE RELATED 19 285 IPR003293 -
Ssu9g1087 286 ProSitePatterns Nudix box signature. 153 174 IPR020084 GO:0016787
Ssu9g1087 286 Gene3D - 23 108 - -
Ssu9g1087 286 SUPERFAMILY Nudix 84 245 IPR015797 -
Ssu9g1087 286 PRINTS NUDIX hydrolase family signature 162 177 IPR020476 -
Ssu9g1087 286 PRINTS NUDIX hydrolase family signature 148 162 IPR020476 -
Ssu9g1087 286 Pfam NUDIX domain 117 241 IPR000086 -
Ssu9g1087 286 Pfam Nudix hydrolase domain 26 104 IPR040618 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1087 Ssu-Chr9 42379122 42382588 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1087 - - gmx:100783941 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1087 9 42379122 42382588 Ssu9g1087 9 42379122 42382588 ECH