Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1085 ATGCAGCCCCTCCGGCCGGCGGCGCTCGCGGCgtttctcctcctcctcctcctcctcgcCTCCACCCCCTCCGACGCGCACAACATCACGCGCATCCTCGCCCAGCACCCCGAGTTCTCCACCTTCAACCACTACCTCACCCTCACGCACCTCGCCCCGGAGATCAACGCCAAGACCACCATCACCGTCTGCGCCGTCGACAACGCCGCCATGAGCTCCCTCCTCGCGAAGCACCCCTCCATCTACACCGTCAAGAACATCCTCGCCCTCCACGTCCTCCTCGACTACTTCGGTGCCAAGAAGCTCCACCAGATCACCAACGGCACCGCGCTCGCCGCCACGTTGTACCAGGCCACCGGCTCGGCCCCGGGCTCCGCCGGCTTCGTGAACATCACCGACCTCCGCGGCGGCAAGGTCGGCTTCGGCGCCGAGGACAACGACGGCACGCTCTCCGCGAGCTTCGTCAAGTCCGTCGAGGAGATCCCCTACAACATCTCCGTGATCCAGATCAGCAACCTTCTCCCCTCGGCCGCAGCGGAGGCCCCTGCGCCCGCACCCAGCAGACAGAACCTCACCAGCATCATGTCCAGGCACGGCTGCAAGGTCTTCGCGGACGCGCTTTCCGCCTCCCCCGACGCGCTTTCCACCTACACCGACAGCCTCGACGGCGGGCTGACCGTCTTCTGCCCCGTCGACGACGCGTTCAAGAAGTTCCTTCCCAAGTACAAAAACCTGACCGCCTCCGCCAAGAGCGAGCTCCTCCTCTTCCACGGCGTGCCCGTGTACATGTCCCTCTCGATGCTGAAATCGAACAACGGCCTTCAGAACACGCTCGCCACCGACGGGGCCAACAAGTTTGATTTCACCGTGCAGAACGACGGCGAAGAGGTCACGCTCAAGACGAAGGCCACCACCGCGAAGATCACCGACACGCTCGTCGACGAACAGCCTCTCGCGATCTTCGCCATCAGTAAGGTGCTTGAGCCGAAGGAGCTGTTCAAGAGTGAGGCGCCGGCTCCGGCTCCCGCGCCGGAGCCGGCCTGCCGCCGATGCTCCCACGCCGGCGAAGaaggggaagaagaagaagaaggccGCTGCCGATGCGCCGGCTGCGGATTCCGACTCCCCGGCTGA 1134 0.627 MQPLRPAALAAFLLLLLLLASTPSDAHNITRILAQHPEFSTFNHYLTLTHLAPEINAKTTITVCAVDNAAMSSLLAKHPSIYTVKNILALHVLLDYFGAKKLHQITNGTALAATLYQATGSAPGSAGFVNITDLRGGKVGFGAEDNDGTLSASFVKSVEEIPYNISVIQISNLLPSAAAEAPAPAPSRQNLTSIMSRHGCKVFADALSASPDALSTYTDSLDGGLTVFCPVDDAFKKFLPKYKNLTASAKSELLLFHGVPVYMSLSMLKSNNGLQNTLATDGANKFDFTVQNDGEEVTLKTKATTAKITDTLVDEQPLAIFAISKVLEPKELFKSEAPAPAPAPEPACRRCSHAGEEGEEEEEGRCRCAGCGFRLPG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1085 377 ProSiteProfiles FAS1/BIgH3 domain profile. 26 174 IPR000782 -
Ssu9g1085 377 SUPERFAMILY FAS1 domain 183 330 IPR036378 -
Ssu9g1085 377 Gene3D FAS1 domain 173 330 IPR036378 -
Ssu9g1085 377 SMART fasc_3 226 330 IPR000782 -
Ssu9g1085 377 Pfam Fasciclin domain 37 107 IPR000782 -
Ssu9g1085 377 Pfam Fasciclin domain 200 329 IPR000782 -
Ssu9g1085 377 ProSiteProfiles FAS1/BIgH3 domain profile. 187 327 IPR000782 -
Ssu9g1085 377 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8 350 IPR033254 -
Ssu9g1085 377 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 8 350 - -
Ssu9g1085 377 MobiDBLite consensus disorder prediction 335 365 - -
Ssu9g1085 377 Gene3D FAS1 domain 25 172 IPR036378 -
Ssu9g1085 377 SUPERFAMILY FAS1 domain 32 174 IPR036378 -
Ssu9g1085 377 MobiDBLite consensus disorder prediction 350 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1085 Ssu-Chr9 42357263 42358396 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1085 - - gmx:100810878 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1085 9 42357263 42358396 Ssu9g1085 9 42357263 42358396 ECH