Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1067 ATGAATTTGGGCGACCTCCACAAAGTTTGGGAAATCAAAGCTCTGAAGAAGAAACCCGCGGCAGAAGAAGCCACGAAGATGTTGGAGAAGATCGCCAAACAGGTCCAACCCATCATGCGCAAACACAAATGGAGGGTCAAGCTTCTCTCTGAATTTTGCCCGAGCAATCCGTCTCTTCTGGGGTTGAATGTTGGAGGTGGTATACATGTGAAGTTGCGGCTACGGAGACCGAACAGGGATTGGGACTTTTACCCATTGGATCAAGTTCTGGATACGATGCTTCACGAGCTTTGCCATAATGTCCATGGCCCTCATAATGCCAGCTTCTACAAGCTCTGGGATGAACTTAGAAAGGAATGTGAAGAGTTGATGGCTAAGGGAATAACTGGCGCAGGAGAGGGGTTTGACCTTCCAGGAAGGCGTTTAGGTGGTTATTCCCGGCAACCTCCACTTGCATCCCTCCGTAAAACTGCACTGGCAGCTGCAGAAAAGAGAGCACAATTGGGATCTCTTCTTCCATCTGGACCAAAACGTCTAGGTGGTGATAGTGTTATAATGAAGGCCCTTAGTCCGGTACAAGCTGCTGCAATGGCTGCAGAACGGAGATTACAGGATGACATATGGTGTGGTTCTCAATCTTGTGAAGATTTGGATCACGGAGATGTTGACTATGAAGTTGCTGAGAACTTTGTGCATAAGGGGAAAAATGTGGGAAGCTCAAGACTAACAGACAATTCTACTCTACCTTCAAATCTGTTGTCTCGAAAAAGAAGTCAGGCTATGGATTCAAGTTTACCTGTTAACTCATCATCTAGTAGTCGTAAATTTGTAGATTTGACTATGGATACACCGAAAATTAGATCTGTCATGGAGCATCAAACTGGGTCTAAACGAAGATGCTGTGGATCAGAAAGCATTTCACATTCTCAATCCAATTCTCAGGCAGGATCTAGTTCGGCAAATTTATCAAGTGTGTCTGGGTCACTATCTGGTGATAATACTGAAGAATCTGGAATGTGGGAGTGTATGACGTGCACTCTATTCAATAAAAGTTTGGCTCCCATATGTGAGTTGTGTGGCGCGCAACAGCCAAAAGATGTTAGTACCAAATACAACACTTGGTCTTGTAAATTCTGTACGTTGGACAACAATGTGAAGTTGGAGAAGTGCTCAGCCTGTGACCAGTGGAGATACTCTCATGGCCCACCAGTGCCAACCCGGGCACCTAACCTTGGTACTTAG 1242 0.4549 MNLGDLHKVWEIKALKKKPAAEEATKMLEKIAKQVQPIMRKHKWRVKLLSEFCPSNPSLLGLNVGGGIHVKLRLRRPNRDWDFYPLDQVLDTMLHELCHNVHGPHNASFYKLWDELRKECEELMAKGITGAGEGFDLPGRRLGGYSRQPPLASLRKTALAAAEKRAQLGSLLPSGPKRLGGDSVIMKALSPVQAAAMAAERRLQDDIWCGSQSCEDLDHGDVDYEVAENFVHKGKNVGSSRLTDNSTLPSNLLSRKRSQAMDSSLPVNSSSSSRKFVDLTMDTPKIRSVMEHQTGSKRRCCGSESISHSQSNSQAGSSSANLSSVSGSLSGDNTEESGMWECMTCTLFNKSLAPICELCGAQQPKDVSTKYNTWSCKFCTLDNNVKLEKCSACDQWRYSHGPPVPTRAPNLGT 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1067 413 SUPERFAMILY Ran binding protein zinc finger-like 336 362 IPR036443 -
Ssu9g1067 413 PANTHER ZINC ION BINDING PROTEIN 1 413 - -
Ssu9g1067 413 Pfam Zn-finger in Ran binding protein and others 337 364 IPR001876 -
Ssu9g1067 413 MobiDBLite consensus disorder prediction 236 332 - -
Ssu9g1067 413 CDD M48_yhfN_like 93 119 - -
Ssu9g1067 413 MobiDBLite consensus disorder prediction 236 278 - -
Ssu9g1067 413 ProSiteProfiles Zinc finger RanBP2 type profile. 370 399 IPR001876 -
Ssu9g1067 413 Gene3D - 332 373 - -
Ssu9g1067 413 ProSitePatterns Zinc finger RanBP2-type signature. 374 393 IPR001876 -
Ssu9g1067 413 MobiDBLite consensus disorder prediction 299 332 - -
Ssu9g1067 413 ProSitePatterns Zinc finger RanBP2-type signature. 340 359 IPR001876 -
Ssu9g1067 413 ProSiteProfiles Zinc finger RanBP2 type profile. 336 365 IPR001876 -
Ssu9g1067 413 ProSiteProfiles WLM domain profile. 1 204 IPR013536 -
Ssu9g1067 413 SMART zf_4 372 396 IPR001876 -
Ssu9g1067 413 SMART zf_4 338 362 IPR001876 -
Ssu9g1067 413 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 413 - -
Ssu9g1067 413 Pfam WLM domain 8 204 IPR013536 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1067 Ssu-Chr9 41961162 41964007 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1067 K22685 - gmx:100795976 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1067 9 41961162 41964007 Ssu9g1067 9 41961162 41964007 ECH