Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1047 ATGTTCTTACTCTTCTCTCACTACTCTACTTCCATGATGCACCATGCAACTCATTTTCTCCTCCAACCCATTTTCACACGTGGGGTATCTGCTTCAGTCCACCTAGTCTTGTTACTTGTGCTTCTTGTGTCTTGGGTATGGGAGAAAGTGCAAGTGGACCATAGAGAAAAGAGTGAGAGAAATGGATTCCACAATTCTGGTTTCTTGTACTACAAACACAGTCTGGTTTGTAGCTTATTTATTTGTGTGTTCAACCTTGTGTTGTGCTTACTAAGCTACTTTTACTTGTATAACAATGATGGTTCAGAGAAGCTTGTCACACTTTCTGATTTGGCCCTCAAAACAGTTGTTTGGGGTGCTGTTTGTGCTTATTTACATTCTAGAAACTCCGAGGCACAGCATCCGAGTTTCCCATGTTCGTTGAGAATTTGGGGCTGGGTCTATGCCTTTGTTTCTTGTTGTTGCCTTGTTATAGACTTTGTTGTCTAtggaaaatatgttttcttgcCAGTTATATACCTTGTTTCTGATATAGTTTCCTCTATTACGGGTTTATTTCTATGTTATGTGGGACATTCTGTTAACAATGTGGTTAAGCTTGCCCCTCTTGAAGAAGCCCTTTTGAATGGTGACTCTAGTGTCTGCAACAATTCTGATCCCAGTAAGGCTAGaggaaatgaaaatttaacccATTATTCAAATGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATCAGTCCATTAATTACTCTAGGTAATGAGAAGACTTTGGAGCACGAGGACCTCCCACTTCTTGCTACTGATGACAGTGCCTATGGGGTTTTTCCAACTTTTAGAAACAAACTTGAGTCAGAGTGTGGTAGTGTTAGGAATGTGACCACTCTTAAGCTGGCGAAGATGTTGTTCTTGTCAACATGGCAAGGGATCCTTTTATCAGGTTTGTTTGCATTCCTATACACATGTGCTTCTTATGTTGGACCCTTTCTTATTGACATCCTTGTTCAATACCTCAGCGGGGAACACAAGTTTAAAAATGAGGGCTATGTTTTGGCCACGGCATTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCAATGAGGCACTGGATGTTTAGGTTCCAGCAGGTAGGGGTTAGGATGCAATCAGAGTTGGTGGCAATGATCTATGCCAAAGGTTTGACTCTTTCATGTCAATCAAAGGAGGTTCGTAGCACTGGGGAAATCATCAACTTAATGACTGTTGATGCTGAAAGGATTGGTGAATTTTGTTGGTACATGCATGATCCGTGGATGTGTGTTTTGCAAGTTGCTTTGGCCTTGTTAATTCTCTATAGAAGTGTAGGGGTTGCTTCAATAGCTGCTCTTGCTGCCGCTGTAATTGTGATGTTGCTAAACCTTCCTGTAGCATCATTGCAAGGAAAGTTCCAAGGCAAGGTAATGGAgttcaaagataaaagaatgaaGGCTATGTCTGAGATTCTGAACAATATGAGGATTCTAAAACTTCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCGGCTTAGGAAAAGTGAGGAGATATGGCTAAAGAAATTTCTAGCTGGTACAACAATTACTAGAATTCTCTTCCAAAACGCCCCAACTTTTATTGCTGTGGTTACATTTGGTGCTTGTGTTCTTATGGGAATCCCACTTGAATCAGGGAAGGTCTTATCTGCACTTGCAACATTCAGAATTCTTCAAATGCCGATCTACAGTCTTCCTGACACAATTTCTATGATTGCACAAACTAAAGTTTCCCTTGATAGGATTGCATCATTTCTTCGTCTAGATGAGTTGCAGACTGATGTAGTAGAGAAGCTTCCATGGGGTAGTTCTGATAAGGCAATTGAATTAGTAGATGGAAACTTCTCTTGGGACTTATCTTCCCCTAATACAACATTGACAAACATAAATCTCACCGTTTTTCATGGTATGAGGGTTGCTGTATGTGGTACTGTTGGATCAGGTAAGTCTAGTTTACTTTCTTGTATAATAGGGGAAGTACCAAAGATATCTGGGACCCTGAAGATATGTGGAACTAAGGCTTATGTTTCTCAATCACCATGGATACAGAGTGGAGAGATTGAAGACAACATATTATTTGGTAAAGAGATGGACAGGGAAAAGTATGAGAAGGTGCTTGAAGCATGTTCCTTGACGAAAGACCTTGAGGTTCTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAAAAGCAAAGAGTGCAAATAGCCCGTGCTCTATACCAAGATGCTGATATATATCTGTTTGACGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCCCATCTCTTTAAGGTACTATTTTTCTAA 2385 0.3971 MFLLFSHYSTSMMHHATHFLLQPIFTRGVSASVHLVLLLVLLVSWVWEKVQVDHREKSERNGFHNSGFLYYKHSLVCSLFICVFNLVLCLLSYFYLYNNDGSEKLVTLSDLALKTVVWGAVCAYLHSRNSEAQHPSFPCSLRIWGWVYAFVSCCCLVIDFVVYGKYVFLPVIYLVSDIVSSITGLFLCYVGHSVNNVVKLAPLEEALLNGDSSVCNNSDPSKARGNENLTHYSNAGFFSILTFSWISPLITLGNEKTLEHEDLPLLATDDSAYGVFPTFRNKLESECGSVRNVTTLKLAKMLFLSTWQGILLSGLFAFLYTCASYVGPFLIDILVQYLSGEHKFKNEGYVLATAFVAAKLVECLSMRHWMFRFQQVGVRMQSELVAMIYAKGLTLSCQSKEVRSTGEIINLMTVDAERIGEFCWYMHDPWMCVLQVALALLILYRSVGVASIAALAAAVIVMLLNLPVASLQGKFQGKVMEFKDKRMKAMSEILNNMRILKLQAWEMKFLSKIIRLRKSEEIWLKKFLAGTTITRILFQNAPTFIAVVTFGACVLMGIPLESGKVLSALATFRILQMPIYSLPDTISMIAQTKVSLDRIASFLRLDELQTDVVEKLPWGSSDKAIELVDGNFSWDLSSPNTTLTNINLTVFHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKICGTKAYVSQSPWIQSGEIEDNILFGKEMDREKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKVLFF 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1047 794 CDD ABCC_MRP_domain1 625 790 - -
Ssu9g1047 794 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Ssu9g1047 794 Pfam ABC transporter 643 777 IPR003439 GO:0005524
Ssu9g1047 794 SMART AAA_5 652 794 IPR003593 -
Ssu9g1047 794 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 794 IPR003439 GO:0005524
Ssu9g1047 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 792 IPR027417 -
Ssu9g1047 794 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Ssu9g1047 794 Gene3D - 607 793 IPR027417 -
Ssu9g1047 794 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 201 790 - -
Ssu9g1047 794 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu9g1047 794 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 201 790 - -
Ssu9g1047 794 Gene3D ABC transporter type 1, transmembrane domain 284 606 IPR036640 GO:0005524|GO:0016021
Ssu9g1047 794 SUPERFAMILY ABC transporter transmembrane region 307 604 IPR036640 GO:0005524|GO:0016021
Ssu9g1047 794 Pfam ABC transporter transmembrane region 311 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1047 Ssu-Chr9 41409997 41412381 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1047 604 784 Calmodulin-binding Proteins AT2G36910 32.323 1.31e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1047 - K05666 gmx:106794105 1371.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1047 9 41409997 41412381 Ssu9g1047 9 41409997 41412381 ECH