Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1046 ATGTTCTTACTCTTGTCTCACTACTCTTCCTCCATGATGCACCATGGAACTCATTTTCTCCTCCAACCCTTTTTCACACGTGGGGTATCTGCTTCAGTCCACCTAGTCTTGTTACTTGTGCTTCTTGTGTCTTGGGTATGGAAGAAAGCGCAAGTTGAGCATAGAGAAAAGAGTGAGAGAAATGGATTCCATAATTCGGGTTTCTTGTGCTACAGACACACCCTGGTTTGTAGCTTAGTTATTTGTGTGTTCAACCTTGTGTTGTGCTTACTAAGCTACTTTTACTTGTATAAAAATGCTGGTTCAGAGGAGCTTGTCACAGTTTCTGATTTGGCTCTCAAAACAGTTGTTTGGGGTGCTGTCTGTGCTTATTTACATTCTAGATACTCCAAGGCACAGGATCCGAGTTTCCCATGTTTGTTGAGAATTTGGTGTTGGGTCTATGCCTTTGTTTCTTGTTCTTGCCTTGTTATTGACTTTCTAATCTATGGAAAACATGTTTTCTTGCCAATTATATACCTTGTTTCTGATATAGGTTCCTCTATTACGGGTTTATTTTTATGCTATGTGGGATGTTCTGTTAACAATATGGCTAAACTTGCCCCTCTTGAGGAGGCCCTTTTGAACGATGACTCAAGTGTAGGCAACAATTCTGATCCCAGTAAGACTAGaggaaatgaaaatttaacccGTTATTCAAATGCTGGATTTTTCAgcattctttctttctcatggATCAGTCCATTAATAACTCTAGGGAATGAGAAGACTTTAGACCATGAGGACCTCCCACTTCTTGCTACTGATGACAGTGCCTATGGGGTTTTTCCAACTTTTAGAAACAAACTTGAGTCAGAGTGTGGTAATGTTAGGAATGTGACCACCCTTAAGCTGGTGAAGGTGTTATTCTTGTCAACATGGCAAGGGATCCTTTTATCAGGTTTATTTGCGTTCCTATACTCATGTGCTTCTTATGTTGGACCCTTTCTTATTGACATCTTTGTTCAATACCTCAATGGGGAACACAAGTTTAAAAATGAAGGCTATGTTTTGGCTATGGCATTTGTTACTGCAAAGCTTGTGGAGTGTCTTTCAGAGAGGCACTGGATGTTTAGGTTCCAGCAGGTTGGGGTTAGGATGCAGTCAAAGTTGGTGGCAATGATCTATGCTAAAGGTTTGATTCTTTCATGTCAGTCAAAGGAGGTTCGTAGCACTGGGGAAATCATCAACTTAATGACTGTTGATGCTGAAAGAATTGGTGAATTTTGTTGGTACATGCACGATCCGTGGATGTGTGTTTTGCAAGTTGCTTTGGCCTTGTTAATTCTCTATAGAAGTGTGGGGGTTGCTTCAGTAGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGCTAAACCTTCCTGTGTCATCCTTGCAAGAAAAGTTCCAAGGCAAGGTAATGGAgttcaaagataaaagaatgaaGGCTACGTCTGAGATTCTGAACAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGTTTAGGAATAGTGAGGAGATATGGCTAAAGAAATTTCTAGCTGGTACAGCAATTATTAGATTTATCTTCCATAACGCCCCAACTTTTATTGCTGTGGTTACATTTGGTACTTGTGTTCTCATGGGAATCCCACTTGAATCAGGGAAGGTCTTATCTGCACTTGCAACCTTCAGAATTCTTCAAATGCCGATCTACAGTCTTCCTGACACAATTTCAATGATTGCACAAACTAAAGTTTCCCTTGATAGGATTGCATCATTTCTTCGTCTAGACGAGTTGCAGACTGATGTAGTAGAGAAGCTCCCATGGGGTAGTTCTGATAAGGCAATTGAATTAGTAGATGGAAATTTCTCTTGGGATTTATCTTCCCCTGATACAACATTGAAAAACATAAATCTCACAGTTTGTCATGGTATGAGGGTTGCTGTATGTGGTACCGTTGGATCAGGTAAGTCTAGTTTACTTTCTTGTATAATAGGGGAAGTACCAAAGATATCTGGGACCCTGAAGATATGTGGAACAAAGGCTTATGTTTCTCAATCACCATGGATACAGAGTGGAAAGATTGAAGACAACATATTATTTGGTAAAGAGATGGATAGGGAAAAGTATGAGAAGGTGCTTGAAGCATGTTCCTTGACAAAAGACCTTGAGGTTCTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGGGTGCAAATAGCCCGTGCTCTATACCAAGATGCTGATATATATCTGTTTGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCCCATCTCTTTAAGGGTATTGTGTACAAGGATACAGCTATAtacttcaaatataattatgctAGTTTTGTTCGGCATTTGGATGGAGAGGCTGTTATCTGA 2457 0.3915 MFLLLSHYSSSMMHHGTHFLLQPFFTRGVSASVHLVLLLVLLVSWVWKKAQVEHREKSERNGFHNSGFLCYRHTLVCSLVICVFNLVLCLLSYFYLYKNAGSEELVTVSDLALKTVVWGAVCAYLHSRYSKAQDPSFPCLLRIWCWVYAFVSCSCLVIDFLIYGKHVFLPIIYLVSDIGSSITGLFLCYVGCSVNNMAKLAPLEEALLNDDSSVGNNSDPSKTRGNENLTRYSNAGFFSILSFSWISPLITLGNEKTLDHEDLPLLATDDSAYGVFPTFRNKLESECGNVRNVTTLKLVKVLFLSTWQGILLSGLFAFLYSCASYVGPFLIDIFVQYLNGEHKFKNEGYVLAMAFVTAKLVECLSERHWMFRFQQVGVRMQSKLVAMIYAKGLILSCQSKEVRSTGEIINLMTVDAERIGEFCWYMHDPWMCVLQVALALLILYRSVGVASVAALAATVIVMLLNLPVSSLQEKFQGKVMEFKDKRMKATSEILNNMRILKLQAWEMKFLSKIIQFRNSEEIWLKKFLAGTAIIRFIFHNAPTFIAVVTFGTCVLMGIPLESGKVLSALATFRILQMPIYSLPDTISMIAQTKVSLDRIASFLRLDELQTDVVEKLPWGSSDKAIELVDGNFSWDLSSPDTTLKNINLTVCHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKICGTKAYVSQSPWIQSGKIEDNILFGKEMDREKYEKVLEACSLTKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKGIVYKDTAIYFKYNYASFVRHLDGEAVI 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1046 818 CDD ABCC_MRP_domain1 625 790 - -
Ssu9g1046 818 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Ssu9g1046 818 SUPERFAMILY ABC transporter transmembrane region 307 604 IPR036640 GO:0005524|GO:0016021
Ssu9g1046 818 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu9g1046 818 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Ssu9g1046 818 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 818 IPR003439 GO:0005524
Ssu9g1046 818 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 201 802 - -
Ssu9g1046 818 Gene3D ABC transporter type 1, transmembrane domain 282 606 IPR036640 GO:0005524|GO:0016021
Ssu9g1046 818 Gene3D - 607 813 IPR027417 -
Ssu9g1046 818 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 201 802 - -
Ssu9g1046 818 SMART AAA_5 652 806 IPR003593 -
Ssu9g1046 818 Pfam ABC transporter transmembrane region 311 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu9g1046 818 Pfam ABC transporter 643 777 IPR003439 GO:0005524
Ssu9g1046 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 793 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1046 Ssu-Chr9 41393215 41395988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1046 604 784 Calmodulin-binding Proteins AT2G36910 33.668 1.62e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1046 - K05666 gmx:106794105 1389.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1046 9 41393215 41395988 Ssu9g1046 9 41393215 41395988 ECH