Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1017 ATGGCTACAGAGGAAGAAATATCCGAAGCGGTTCAGTCGTTGTTGCGCGAATCGAACCCTAGGAGCCGAAGCTTCACAACGCTGAACCAAGTGGTGGAGGAGCTCCAGGCCAAGCTCGGCCACGACCTCACTCACAAGCTCGATTTCATCACCGCGCAGATCAACCTCCTCTGCGAATCCCGACAACAACAGCaaccgccgccgccgccgccgcatCCTCCGCCGCAAAATCCGCACAGGCAGTTactgcaacaacaacaacaaccgcCGAAGGACCGTTTTGCCCTTCCGCAAAACCCTAATTTCCACTCCGCCCCTGTCGCTTCTGCCTTTCAGAGCTTCCCTTCTAACGCTGCTGATGCTTCGCGCGCTGAAGCGCCTCCCGCTCCTGCGGCCGTTGAAGGCAACGAGGTTCCCAAGGAAAGTACTCAAACTAAGGTGAAGAGAAGAGGTGGCCCAGGAGGTCTCACCAAACTTTGTGGTGTTTCACCTGAACTTCAGGTCATTGTTGGCCAGCCAGCATTGTCAAGGACGGAGATTGTGAAGCAACTGTGGGCTTACATAAGGAAAAACAATCTCCAAGATCCCAgcaacaaaaggaaaataatttgcaATGATGAGCTGCGCATGGTGTTTGAGACGGATTGTACTGATATGTTCAAGATGAATAAGTTGCTAGCTAAACACATTATCCCCCTTGAACCAACCAAACGGCCTGTTCCAAAGAGCAGAAGGTAG 738 0.4743 MATEEEISEAVQSLLRESNPRSRSFTTLNQVVEELQAKLGHDLTHKLDFITAQINLLCESRQQQQPPPPPPHPPPQNPHRQLLQQQQQPPKDRFALPQNPNFHSAPVASAFQSFPSNAADASRAEAPPAPAAVEGNEVPKESTQTKVKRRGGPGGLTKLCGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRMVFETDCTDMFKMNKLLAKHIIPLEPTKRPVPKSRR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1017 245 MobiDBLite consensus disorder prediction 102 119 - -
Ssu9g1017 245 Pfam SWIB/MDM2 domain 160 230 IPR003121 -
Ssu9g1017 245 SMART swib_2 156 235 IPR019835 -
Ssu9g1017 245 Pfam DEK C terminal domain 3 56 IPR014876 -
Ssu9g1017 245 Gene3D - 1 59 - -
Ssu9g1017 245 PANTHER - 1 238 - -
Ssu9g1017 245 ProSiteProfiles SWIB/MDM2 domain profile. 155 232 IPR003121 -
Ssu9g1017 245 Gene3D SWIB/MDM2 domain 151 239 IPR036885 -
Ssu9g1017 245 MobiDBLite consensus disorder prediction 1 22 - -
Ssu9g1017 245 MobiDBLite consensus disorder prediction 63 78 - -
Ssu9g1017 245 CDD SWIB-MDM2_like 160 230 - -
Ssu9g1017 245 MobiDBLite consensus disorder prediction 58 156 - -
Ssu9g1017 245 MobiDBLite consensus disorder prediction 79 94 - -
Ssu9g1017 245 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 238 - -
Ssu9g1017 245 SUPERFAMILY SWIB/MDM2 domain 149 235 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1017 Ssu-Chr9 40779032 40781115 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Ssu9g1017 SWIB 2.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1017 K15223 - gmx:100801960 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1017 9 40779032 40781115 Ssu9g1017 9 40779032 40781115 ECH