Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1011 ATGAGTTTCGTACCGAAGGAGACAATCGAAGTCATCGCACAGAGCATCGGCATCACCAATTTGTCCTCCGATGTTGCCCTCGATCTCGCCCCCGATCTCGAATATCGCATTCGCGAAATCATGCAGGAGTCGATAAAATGCATGCGCCATTCGATGAGAACTTGTCTTACTACAGATGATGTGGATACTGCACTGGCATTGAGAAATTTGGAGCCGATATATGGGTTCTCCTCTGATGATCCTCTGCGCTTCAAAAGAGCTGCTGGACATAAGGATCTGTTCTACATTGATGACAAAGATGTGGATATCAAAGATCTCCTTGAAGCTCCTCTACCAAAAGCACCCCTTGATACATCAATTACCAGTCACTGGTTGGCTATTGAAGGTGTGCAACCCGCAATTCCTGAAAATGCTCTGGTAGAAGCTCCCTCTGAGAtaagaaaatttgaatataaggAAGATGGGCTTCCTATTGATGTTAAATTACCtgttaaacatttaataacTAGGGAGCTTCAGCTTTACTACGAGAAAATAACTGACATAACTTTAAATAAGCCTGGATCCATTCCTTTTAGAAAAGCATTGGTTAGCTTGGCAACTGACTCGGGACTCCATCCCTTAGTTCCTTATTTCGCATGCTTTGTTGCTGATGAGGTGGCAcggaatttaaataatttagctGTTTTATTTGCCTTGATGCGCCTTGTGCGGAGCCTTTTGCAAAATTCTCAGATACACATAGAACTTTATTTACATCAATTGATGCCGCCTATAATTACTTGCATTGTTGCAAAAAGGATAGGAAACAGACTATCTGATAATCACTGGGAGCTTAGGAACTTCAGTGCTAATCTTGTTGCTTCAATATGCCAAAGATTTGGGCATATTTATCACAATCTTCAGTCACGTGTGACAAAGACATTTCTTCATTCTTTCTTGGATCCTACAAAAGCTTTGCCTCAACACTATGGTGCAATTAAAGGGATAGAAGCTCTTCGATCAAGACTGATTCGCTTGCTCATACTTCCAAATCTCGAGCCATATTTGCATCTTCTTGAGCCAGAAATGCAACCTGAgaagcaaaaaaatgaaatgaagaggCATGAAGCTTGGCGAGTTTATGGGGCCTTGTTGGGTGCAGTAGGCCAATGTATACATGAAAAGGTCAAAGTGTTCAGCAGTTTGCTCTCTCCTTCAACTCGTGTTACTTCAAGAGGCAATGGAAAAGCCATGATAGCGATGTCAGGCAAACGAAAAGCCAGCGCCGACAATCTAatgcagcagcagcagcagcaaccTCCTCTGAAGAAACTTGCAACAGATGGCCCTGGGGGCGTGGTACCGATGAACTCCATGTCAGTTGACATGCAAGGCTCAACAGGTGGATTTTCCACCATGATGGGGGTTCCTACCATGTCGATGGCGCGTCAAGTATCCAACGACAATGCGCAGGGTAGAGAGGTTGGAGATCAACAAAGGAAGGTGTCTACCACTCTTGCTCAGGCTTGGAAGGATGACTTTGATGCAGGAAATTTGGTGTCATCAGTGGTTGAGTTATTTGGCGAAAGTGTGTTGCCATTTGTTCCAAACCCTGAAGCATGTATGTTTTTGTAG 1617 0.4137 MSFVPKETIEVIAQSIGITNLSSDVALDLAPDLEYRIREIMQESIKCMRHSMRTCLTTDDVDTALALRNLEPIYGFSSDDPLRFKRAAGHKDLFYIDDKDVDIKDLLEAPLPKAPLDTSITSHWLAIEGVQPAIPENALVEAPSEIRKFEYKEDGLPIDVKLPVKHLITRELQLYYEKITDITLNKPGSIPFRKALVSLATDSGLHPLVPYFACFVADEVARNLNNLAVLFALMRLVRSLLQNSQIHIELYLHQLMPPIITCIVAKRIGNRLSDNHWELRNFSANLVASICQRFGHIYHNLQSRVTKTFLHSFLDPTKALPQHYGAIKGIEALRSRLIRLLILPNLEPYLHLLEPEMQPEKQKNEMKRHEAWRVYGALLGAVGQCIHEKVKVFSSLLSPSTRVTSRGNGKAMIAMSGKRKASADNLMQQQQQQPPLKKLATDGPGGVVPMNSMSVDMQGSTGGFSTMMGVPTMSMARQVSNDNAQGREVGDQQRKVSTTLAQAWKDDFDAGNLVSSVVELFGESVLPFVPNPEACMFL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1011 538 SUPERFAMILY ARM repeat 207 394 IPR016024 -
Ssu9g1011 538 Gene3D - 164 369 IPR046344 GO:0006367
Ssu9g1011 538 Pfam TAF6 C-terminal HEAT repeat domain 259 346 IPR011442 GO:0006367
Ssu9g1011 538 CDD TAF6C 165 381 IPR011442 GO:0006367
Ssu9g1011 538 Gene3D Histone, subunit A 1 66 IPR009072 GO:0046982
Ssu9g1011 538 Pfam TATA box binding protein associated factor (TAF) 1 65 IPR004823 -
Ssu9g1011 538 SUPERFAMILY Histone-fold 1 65 IPR009072 GO:0046982
Ssu9g1011 538 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 538 - -
Ssu9g1011 538 SMART TAF_cls 2 68 IPR004823 -
Ssu9g1011 538 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 538 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1011 Ssu-Chr9 40683803 40689683 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1011 K03131 - gmx:100799998 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1011 9 40683803 40689683 Ssu9g1011 9 40683803 40689683 ECH