Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1004 ATGTTCGTTCAAAGGGTCTTGTCCCGTTCCTCTGCCACCCTTTCTCGAAGCTTCACTCTTTTCTCTGTTTCGCGAAATTCCCAACCCTTCTCCACCACCCTGTCCAATCACCTCCATTCCCTCCTCCACCCATCACCCAACAAGCTGATACCGGTTCAAGCCAGTTTGGTGAATCCAATGAATTCATCCTTGTCTTCGAGATTCAGATTTTCTTCAACTGCCTCACCTGAATCTGCAAGTGATGAGCCTGTAAAGACAAGTGAAGAAGCAAAAGTAACTGATCAGTCTGAACAGGCCAAAGCTGCGGATCAAACCAAAGAATCAGATGTAGAGAGTGAATGTGATCTGTCCAGGGATGATTTGATAAAGCTTGTTTCTGAGAAGGAACAACTGTTGAAGTTGAAGCACAAGGAGATTGAGAAAATGCAGGATAAAGTTCTGCGTACTTATGCAGAGATGGAGAATGTCATGGAGAGGACAAGGCGCGAAGCAgagaattcaaaaaaatttgcaatacaGAATTTTGCGAAGAGTCTACTAGATGTTGCTGACAATTTGGGGAGAGCTTCCTCGGTTGTAAAGGACAGCTTTTCGAAAATTGAATCCCCTAAGGAGTCTTCTGAAGCAGCCCAACTCCTGAAAACACTTCTGGAAGGTGTTGAAATGACAGAGAAACAACTTGCAGAGGTACTCAAAAAATTTGGTGTTGAAAAATTTGATCCTACAAATGAGCCATTTGATCCACACAGGCACAATGCCATCTTCCAAATCCCTAATGCTTCCAAGGCCCCTGGCACTGTTGGAGTTGTTCTGAAGGTGGGATATATGCTCTACGATCGTGTTCTTCGTCCAGCAGAAGTTGGTGTAACTCAAGAAGTGGAGGATAACAAAGCGGTTGAGTGA 903 0.4352 MFVQRVLSRSSATLSRSFTLFSVSRNSQPFSTTLSNHLHSLLHPSPNKLIPVQASLVNPMNSSLSSRFRFSSTASPESASDEPVKTSEEAKVTDQSEQAKAADQTKESDVESECDLSRDDLIKLVSEKEQLLKLKHKEIEKMQDKVLRTYAEMENVMERTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKDSFSKIESPKESSEAAQLLKTLLEGVEMTEKQLAEVLKKFGVEKFDPTNEPFDPHRHNAIFQIPNASKAPGTVGVVLKVGYMLYDRVLRPAEVGVTQEVEDNKAVE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1004 300 Gene3D - 120 234 IPR013805 -
Ssu9g1004 300 ProSitePatterns grpE protein signature. 246 289 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu9g1004 300 PANTHER GRPE PROTEIN 3 293 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu9g1004 300 PRINTS GrpE protein signature 243 258 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu9g1004 300 PRINTS GrpE protein signature 270 289 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu9g1004 300 PRINTS GrpE protein signature 147 163 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu9g1004 300 Hamap Protein GrpE [grpE]. 80 291 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu9g1004 300 Gene3D Head domain of nucleotide exchange factor GrpE 235 290 IPR009012 GO:0006457
Ssu9g1004 300 PANTHER GRPE PROTEIN HOMOLOG 3 293 - -
Ssu9g1004 300 MobiDBLite consensus disorder prediction 69 113 - -
Ssu9g1004 300 Pfam GrpE 122 290 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu9g1004 300 CDD GrpE 140 289 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu9g1004 300 MobiDBLite consensus disorder prediction 82 113 - -
Ssu9g1004 300 Coils Coil 125 163 - -
Ssu9g1004 300 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 127 235 IPR013805 -
Ssu9g1004 300 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 236 291 IPR009012 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1004 Ssu-Chr9 40580823 40583547 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1004 K03687 - gmx:100812682 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1004 9 40580823 40583547 Ssu9g1004 9 40580823 40583547 ECH