Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1002 ATGTTTACGTTCACAAGGGATGGTCGTTTTACGGGAAATGAAGCCATCAAGTTTTTTGCCAAGTCAAACTTGTCTCGACAAGAACTAAAGCagGTATGGGCCATTGCAGATTCAAAACGAGAAGGATATCTTGGTTTCAAAGAATTTGTCATTGCTATGCAGCTCATTTCTTTAGGACAATCTGGATACTCAGTAACACATGATCTGCTAACTAGTGATGGTAATAAAAGGATTTATCAATATTTGGCTTTGTTTATGCAGAAGAAAAAACGCAAACAGAAAGATAAAGAATTTAGTGTTAGTCCTCAACCATCACCCGCAAGTAATTGGTTTTCTGCAAAGTCAGCAAAAAAGGTGCCTGCTTCATCGGTGACATCAATTATAGATGGTTTAAAGAGACTTTACCTTCAAAAGTTGAAGCCTTTAGAAGTTACTTACCGCTATAATGATTTTGTATCTCCTCTATTGACAAATAGTGACTTTGATGCCAAACCTATGGTTCTACTTTTGGGTCAATACTCAACTGGAAAAACaacatttattaaacatatgcTTAGAAGCAATTATCCAGGCAAGAAAATCAATTGTTGCGTTAGTTTTGCAAAGccaattatagttttatttacaCAGTCTGGACTAGATGAAAGAAGCATTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTGGTGGTCTTACAACTTATGGCACTGCATTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTCTGTTGGAGCACATTACATTTGTTGATAGCCCTGGAGTTTTATCTGGAGAAAAACAAAGGACACAAAGACAATATGATTTTACAGGTGTAACATCTTGGTTTGCAGCTAAATGTGATTTAATACTCCTTCTGTTTGATCCTCACAAACTTGATGTCAGCGATGAGTTCAAGCGTGTGATATCATCCCTACGGGGACATGATGACAAAATTCGAGTGGTTTTGAACAAGGCAGACCAAGTTGATACTCAACAACTAATGAGGATATATGGTGCATTAATGTGGTCACTTGGGAAGGTGTTGAATGTTCCTGAAGTCATGCGAGTGTATATTGGcTCTTTCAACGACAAGCCCATAAATGATTCTATCAGTGGTCCACTTGGTAATGAACTCTTTCAAAAAGAACAAGATGACCTTCTTTCAGATCTGAAAGATATACCAAAGAAAGCCTGTGATCGTAAaATCAATGAATTTGTAAAACGAGCCCGAGCTGCCAAGATACATGCTTATATTATCAGTCATCTTAAAAAGCAAATGCCTGCTATGATGGGCAAAGCTAAAGCTCAACAAAAGCTCATTGATAATTTGGATGCTGAATTTGTAAAGGTACAAAAGGAGTTCCATCTACCACCTGGTGACTTTCCAAATGTTGAACATTTCAAAGAGGTCTTAAGTGGTTACAACATTGACAAGTTTgagaaattgaacaaaaaaatgatacaaaCAATGGATGACATGCTTGCTCATGATATTCCTAACCTTTTGAAGACTTTTAGAAACCCCTATGGTTAA 1548 0.3605 MFTFTRDGRFTGNEAIKFFAKSNLSRQELKQVWAIADSKREGYLGFKEFVIAMQLISLGQSGYSVTHDLLTSDGNKRIYQYLALFMQKKKRKQKDKEFSVSPQPSPASNWFSAKSAKKVPASSVTSIIDGLKRLYLQKLKPLEVTYRYNDFVSPLLTNSDFDAKPMVLLLGQYSTGKTTFIKHMLRSNYPGKKINCCVSFAKPIIVLFTQSGLDERSIPGNTVAVQADMPFGGLTTYGTAFLSKFECSQMPHPLLEHITFVDSPGVLSGEKQRTQRQYDFTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDTQQLMRIYGALMWSLGKVLNVPEVMRVYIGSFNDKPINDSISGPLGNELFQKEQDDLLSDLKDIPKKACDRKINEFVKRARAAKIHAYIISHLKKQMPAMMGKAKAQQKLIDNLDAEFVKVQKEFHLPPGDFPNVEHFKEVLSGYNIDKFEKLNKKMIQTMDDMLAHDIPNLLKTFRNPYG 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1002 515 CDD EH 5 61 IPR000261 GO:0005515
Ssu9g1002 515 Coils Coil 438 458 - -
Ssu9g1002 515 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 437 IPR027417 -
Ssu9g1002 515 Gene3D - 1 77 - -
Ssu9g1002 515 SUPERFAMILY EF-hand 2 71 IPR011992 -
Ssu9g1002 515 CDD EHD 166 413 - -
Ssu9g1002 515 Pfam Dynamin family 167 329 IPR045063 -
Ssu9g1002 515 PANTHER CALCIUM-BINDING EF HAND PROTEIN 7 513 - -
Ssu9g1002 515 SMART eh_3 3 77 IPR000261 GO:0005515
Ssu9g1002 515 Pfam Cytoskeletal-regulatory complex EF hand 7 56 IPR000261 GO:0005515
Ssu9g1002 515 PANTHER EH DOMAIN 7 513 - -
Ssu9g1002 515 Gene3D - 131 506 - -
Ssu9g1002 515 Pfam N-terminal EH-domain containing protein 130 162 IPR031692 -
Ssu9g1002 515 Pfam Domain of unknown function (DUF5600) 405 506 IPR040990 -
Ssu9g1002 515 Gene3D - 167 398 IPR027417 -
Ssu9g1002 515 ProSiteProfiles EF-hand calcium-binding domain profile. 24 59 IPR002048 GO:0005509
Ssu9g1002 515 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 161 400 IPR030381 GO:0005525
Ssu9g1002 515 ProSiteProfiles EH domain profile. 1 69 IPR000261 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1002 Ssu-Chr9 40548558 40554831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1002 7 514 EF-hand Containing Proteins AT3G20290 75.822 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1002 K12483 - gmx:100816958 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1002 9 40548558 40554831 Ssu9g1002 9 40548558 40554831 ECH