Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0952 ATGGTTCAGATCGCGAGGAGGAAGAAGGGACGGCCGTCGAAGGCGGATCTGGCGCGCCGCTCCGGCGAGTCTCCGGCCTCCCCGTCGCAGCCCGATCTCCGGCGAAGCCTCCGGCGCCGTAGCGTGCGGTACAACATCATCGACTACGACGGCGATTACCTCGACGACGAGGAGGACGAGAGGAGGCGCGAGAAGAAGAAGCTCAAGCTCATGGCGAAGCTGAACCAGGGCgaaggtgaagaagaagaagaagaagtgcgAGAAGAAGAAAACGAGGCGGCATCGAATCGCACTAGCACAGAGGAGCGTGCGGAACACGCGCTGGTAGAGGAATACGACGACGAAAACGAACGAGAGGAAGAGAACGAAGACGCCGAAGAAGGGCACAAAGAAGACGAAGACGGCGTGGTAAAGGGAAGAAAAGTGGAATCGAAAGGGCTCCACTCTGTTTCTGTTTCAGGAACTCCAGTGATTCTTCAATCTGGGATTCCGCTGCCTGATAGGAGGACTCTGGAATTGATCCTTGACAAGCTTCAGAAGAAGGACACTTATAATGTGTTTGCCGAGCCTGTTGATCCGGAAGAGCTTCCTGATTATCACGATGTGATCGAGCATCCCATGGACTTTGCCACTGTGAGGAAGAAGTTGGCAAATGGATCTTATACTACCTTAGAACAATTTGAGAgtgatgtatttttaatttgctCAAATGCAATGCAATACAATGCACCAGAGACCATATACCACAAACAGGCACGATCAATACAAGAACTTGGACGAAAGAAGTTTGAGAAGTTGAGGGTTGGCTTTCAACGCTCTCAGATTGAGCTGAAATCTGAGCAAAAAGCAGAATCTAATTATTTGGTTAAGAAGCAACCAAAGAAGCCACTGGCACGTGTCTCACAGGAACCTGTTGGCTCTGAATTCTCCTCTGGGGCAACTCTTGCTACTATTGCAGATGTACAGCCAACTTCCCATCCGATGCAAGGTGGTAGATGTGAGAGGCCTGGCAATATCAATGGTATTTTGGAGGCAAATGCTTTCTGGATTGATGCAAATCAAGAGAGAGCTGAAGATGTTTTGTTAGGGAAAGGTTTTCTCTCTAAGTGGGGAAGGAAGTCCTTTGTGCTTGACGAAAGTCGTCATACATCTTATAATATGTCCAATCAACCAATTGCTAGATCAGATTCAATATTTATGACCTTTGAGAGTGAAATGAAGCATCTGGTTACTGTTGGACTTCATGCAGAATATTCCTATGCTAGGAGTTTGGCCCGTTTTAGTGCATCTCTAGGACCTATTGCTTGGAAAATTGCTTCCCACAGGATTCAGCAGGCATTACCAGCTGGCTGTAAATTTGGTCGTGGTTGGGTTGGAGAATATGAACCACTTCCTACCCCAATATTAATGGTTAATGACTGTCCCCCAAAGGAAACTAGTTTGGTTATGAAGTTGCATTCCACTACTGAATTACCAAAGGGTGACAAAAATTGTAAGAATGTGGAGCCCAGCATTGAACATCCTGTTAATGGACAGATGCTTGAGGGAAAACATCCTTTGATGCCTGATTCTGAAGGAAAACCTCTCTTTGGTTCTGCTGGAGCAAGGCTCAGTGCTCCTGTCAACATCGTAATTGAGGAGCAGAACGTCCAATCCAGGAAATTAGACAAGTCTGAGAATAAGGGTTTGAAACAAATGGAGTTGAATTCTTTACCCTCAAGTAATCAGAATAATACAGGTCTGATTGCAAAGTTATGCAAGTAA 1764 0.4535 MVQIARRKKGRPSKADLARRSGESPASPSQPDLRRSLRRRSVRYNIIDYDGDYLDDEEDERRREKKKLKLMAKLNQGEGEEEEEEVREEENEAASNRTSTEERAEHALVEEYDDENEREEENEDAEEGHKEDEDGVVKGRKVESKGLHSVSVSGTPVILQSGIPLPDRRTLELILDKLQKKDTYNVFAEPVDPEELPDYHDVIEHPMDFATVRKKLANGSYTTLEQFESDVFLICSNAMQYNAPETIYHKQARSIQELGRKKFEKLRVGFQRSQIELKSEQKAESNYLVKKQPKKPLARVSQEPVGSEFSSGATLATIADVQPTSHPMQGGRCERPGNINGILEANAFWIDANQERAEDVLLGKGFLSKWGRKSFVLDESRHTSYNMSNQPIARSDSIFMTFESEMKHLVTVGLHAEYSYARSLARFSASLGPIAWKIASHRIQQALPAGCKFGRGWVGEYEPLPTPILMVNDCPPKETSLVMKLHSTTELPKGDKNCKNVEPSIEHPVNGQMLEGKHPLMPDSEGKPLFGSAGARLSAPVNIVIEEQNVQSRKLDKSENKGLKQMELNSLPSSNQNNTGLIAKLCK 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0952 587 Coils Coil 54 92 - -
Ssu9g0952 587 ProSiteProfiles Bromodomain profile. 179 249 IPR001487 GO:0005515
Ssu9g0952 587 PRINTS Bromodomain signature 196 212 IPR001487 GO:0005515
Ssu9g0952 587 PRINTS Bromodomain signature 212 230 IPR001487 GO:0005515
Ssu9g0952 587 PRINTS Bromodomain signature 182 195 IPR001487 GO:0005515
Ssu9g0952 587 PRINTS Bromodomain signature 230 249 IPR001487 GO:0005515
Ssu9g0952 587 MobiDBLite consensus disorder prediction 73 137 - -
Ssu9g0952 587 Gene3D - 166 287 IPR036427 GO:0005515
Ssu9g0952 587 CDD Bromodomain 167 263 - -
Ssu9g0952 587 MobiDBLite consensus disorder prediction 1 41 - -
Ssu9g0952 587 SMART bromo_6 160 268 IPR001487 GO:0005515
Ssu9g0952 587 MobiDBLite consensus disorder prediction 90 111 - -
Ssu9g0952 587 ProSitePatterns Bromodomain signature. 185 241 IPR018359 -
Ssu9g0952 587 Pfam Bromodomain 173 253 IPR001487 GO:0005515
Ssu9g0952 587 MobiDBLite consensus disorder prediction 566 587 - -
Ssu9g0952 587 MobiDBLite consensus disorder prediction 112 130 - -
Ssu9g0952 587 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 502 - -
Ssu9g0952 587 SUPERFAMILY Bromodomain 164 266 IPR036427 GO:0005515
Ssu9g0952 587 Coils Coil 109 129 - -
Ssu9g0952 587 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0952 Ssu-Chr9 39378771 39383412 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0952 K22184 - gmx:100799455 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0952 9 39378771 39383412 Ssu9g0952 9 39378771 39383412 ECH