Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0918 ATGGGTTGCAGAAAGAGGGATTCGCCCACAGAGGATCACACTTCTTCTAATTCTTCTTGTGCTTCACTCGGCGAGGCTTTGCTTTTCACGACCATGTGCATCGTTGGCCTCCCTGTCGACGTTCACGTTAAGGATGGCTCTGTCTATTCTGGAATCTTCCACACTGCTTCTGTTCACGCCGATTACGCTATTGTTTTGAAGAGAGCAAGGATGACCAAGAAGGGAAAGGGCAACACCAATGTAGGAAATGAGGGCTTGGTGGATACGCTAGTGATTCTATCTGGTGATCTTGTGCAAGTTGTTGCTAAGGGAGTGATTCTTCCTGCAGATGGTGTTGGTGGAAATATAACTGGTGATGATGAGGAAGCAGTTGTGCATAATGTTTGTTCTGAGAGTTTAACATGTGAGGTAGAGAATCATACAGAGCCATTGATGGGTGTAAAACAGATTAATCAATCAAGGCAAGCTGGAGATGACAAGTCAAACTCAAAAGGGAAAGCTGATAACTGCAGACAGAAGTCTGAGtttgttaatgaaaaaattGATGAAAAGATTCAAAGCCTCAATTCAAGCCATGAAAGCCAAGAGGTAGCTGTTGAGCATGGAAGCACTGATAGGACATCAAGTCCTTCTGATAATGGATTATTCTGCAACAATGCTCCTGCATCTGTTAAAGCCGATGATCGATGTAGTGAAAGGTCTACTTCAGCAGAGTCTGTCTCTACAAATTCAACCCAAGGTGTGGATCTCATCTCAGAGTCACAGCCAGCAAGGTCTGTTGAAATATCTGCTCCAAAGGGTACAGATTCTACCAGAAATGCTAAGGAATTTAAGCTCAATCCAGCTGCCAAAACCTTCTCTCCATCTTTTGCAAATCCTATATCAGCAACTTCTGCTGCAAATATGGTATACATACCAAATAGCTCGCCTGTGGTACCTGTTACTAGTATTCAACCAGAAGTTGGATTCAATACTTTTGCTTCTCGGCCATCAGTGCCTGTTAAGGTTGCACAGTATAGTAATTTGACAGTGGGAAGTGGTGGCAGTGGCTCTCAGTTTTCACAACCTATTGTTGGACAACTGGCACATAGGACCCAACCTCTACGGTATGCTACACATTACACTCCTGTTTTATCTGAACCTGCTTATTTGCAACCAAGCTCCCCTGCTGTTATGGTTGGACGTTCCCCCCAGTTAGTCTATGTTCAGCCAGTTTCCAATGATTTGATTCATGGACCGACAGCTGTTGCACCAGTCTCAGCTCGCCCTCTGTTGAATCATGTACAATTTCCAAAGCAGCAAgGAGGAACAATTGGTCCAGCAATGCCAGTTTGTGTGCCCCCACCTGTCCTAACAAGTGGACATCAGCCCTTTGCACTTCAAAGCCACATTCCACTTCTGCAACCTGGCTTTCCTGTCACTCGACCTATTTCAGTCCCAGGACCAAATGGTTTCTATGGCACTaagttttag 1473 0.4426 MGCRKRDSPTEDHTSSNSSCASLGEALLFTTMCIVGLPVDVHVKDGSVYSGIFHTASVHADYAIVLKRARMTKKGKGNTNVGNEGLVDTLVILSGDLVQVVAKGVILPADGVGGNITGDDEEAVVHNVCSESLTCEVENHTEPLMGVKQINQSRQAGDDKSNSKGKADNCRQKSEFVNEKIDEKIQSLNSSHESQEVAVEHGSTDRTSSPSDNGLFCNNAPASVKADDRCSERSTSAESVSTNSTQGVDLISESQPARSVEISAPKGTDSTRNAKEFKLNPAAKTFSPSFANPISATSAANMVYIPNSSPVVPVTSIQPEVGFNTFASRPSVPVKVAQYSNLTVGSGGSGSQFSQPIVGQLAHRTQPLRYATHYTPVLSEPAYLQPSSPAVMVGRSPQLVYVQPVSNDLIHGPTAVAPVSARPLLNHVQFPKQQGGTIGPAMPVCVPPPVLTSGHQPFALQSHIPLLQPGFPVTRPISVPGPNGFYGTKF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0918 490 MobiDBLite consensus disorder prediction 159 189 - -
Ssu9g0918 490 Pfam Ataxin 2 SM domain 26 103 IPR025852 -
Ssu9g0918 490 PANTHER ATAXIN 2-RELATED 1 487 IPR045117 GO:0003723
Ssu9g0918 490 MobiDBLite consensus disorder prediction 152 246 - -
Ssu9g0918 490 PANTHER POLYADENYLATE-BINDING PROTEIN INTERACTING PROTEIN 1 487 - -
Ssu9g0918 490 MobiDBLite consensus disorder prediction 190 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0918 Ssu-Chr9 38843685 38851169 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0918 - - gmx:100794683 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0918 9 38843685 38851169 Ssu9g0918 9 38843685 38851169 ECH