Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0385 ATGGCTTCCGAACATATAACAATGGCATCCCATATTGTTGGATACCCTCGCATGGGCCCCAAGAGAGAGCTGAAGTTCGCTTTGGAGTCATTCTGGGATGGAAAGAGCAGCACCGAGGATTTGCAGAAGGTGGCTGCTGATCTTAGGGCATCCATCTGGAAGCAGATGACTGATGTTGGGATCAAGTACATCCCTAGCAACACTTTCTCATACTATGATCAGGTGCTCGATGCCACCGCCATGCTCGGCGCCGTTCCACCCAGATATGGGTGGACTGGTGGGGAGATAGGATTTGATACCTACTTCTCCATGGCCAGAGGTAATGCCTCTGTGCCCGCCATGGAGATGACCAAGTGGTTTGACACCAACTACCACTTTATTGTCCCTGAATTGGGACCTGATGTGAATTTCACCTATGCTTCCCACAAGGCAGTGAATGAGTACAAGGAGGCCAAGGCGCTTGGAGTAGATACAGTTCCAGTCCTCATTGGCCCTGTATCATACTTGGTGCTCTCCAAACCTGCGAAGGGTGTTGATAAATCCTTTTGTCTTCTTTCTCTCCTCCCAAAAGTCCTTGCTGTTTATAAGGAAGTTGTGGCTGATCTTAAGGCAGCTGGTGctttgtggattcaatttgaTGAACCTATCCTTGTCTTAGATCTTGACTCTCAAAAGTTGCAAGCATTTTCTGCAGCATACACAGAACTTGAATCTGCTTTATCTGGCTTAAATGTTCTTATTGAGACCTACTTCGCTGACGTTCCTGCCGAGGCATACCAGACCCTCACAGCTCTTAATGGCGTCACAGCGTTCGGATTTGATTTAGTCCGTGGAACTAAGACTCTTGATCTAATCAAGGGTGGATTTCCCAGTGGAAAATACTTGTTTGCTGGAGTGGTTGATGGAAGGAACATTTGGGCTAATAATCTTGCTGCTTCTCTCAATACATTAAATAGTCTTGAGGGCATTGTGGGCAAAGATAAACTTGTTGTGTCCACCTCCTGCTCTCTTCTTCACACTGCTGTTGATCTTGTCAATGAGACCAAGGTGGATAATGAGATAAAATCATGGCTGGCTTTTGCTGCCCAAAAAGTTGTTGAAGTAAATGCATTGGCCAAGGCATTGTCTGGTCAAAAGGATGAGGCCTTTTTCTCTTCTAATGCTGCTGCTCAGGCTTCAAGAAAGTCCTCTCCGAGAGTGACTAATGAGGCTGTTCAGAAGGCTGCCGCTGCATTGAAGGGTTCTGATCATCGCCGTGCCACAAATGTCAGCTCTAGATTGGATGCTCAACAAAAGAAGCTCAACCTTCCAATCCTCCCAACCACCACTATTGGATCCTTCCCGCAGACTGTTGAATTGAGGAGGGTGCGTCGTGAATACAAGGCTAACAAgatcTCGGAGGAGGAGTACGTTAATGCAATTAAAGAGGAAATCCGCAAAGTTGTTGAACTCCAAGAGCAGCTTGATATTGATGTCTTGGTACATGGGGAGCCTGAGAGGAATGATATGGTGGAGTACTTTGGTGAGCAGTTATCGGGCTTTGCCTTTACCGTAAATGGGTGGGTGCAATCTTATGGATCTCGTTGTGTGAAGCCACCAATCATCTATGGTGATGTGAGCCGCCCAAAGCCAATGACGGTCTTCTGGTCATCCACTGCTCAGAGCATGACCAAACGCCCAATGAAGGGAATGCTTACTGGCCCTGTCACTATCCTGAACTGGTCCTTTGTCCGAAATGACCAGCCTAGGTCTGAGACCACCTATCAGATTGCTTTGGCTATCAAGGACGAAGTAGAAGATCTTGAAAAGGCTGGTATTACTGTTATCCAAATTGATGAGGCTGCTTTGAGAGAGGGGTTACCATTGAGAAAGTCAGAGCAAGCTCACTACTTGGACTGGGCTGTCCATTCCTTCAGGATCACCAATGTTGGTGTGCAGGATACAACCCAGATCCACACCCACATGTGCTACTCTAACTTCAATGACATCATCCACTCAATCATTGATATGGATGCTGATGTGATCACCATTGAGAACTCTCGCTCTGATGAAAAGCTCCTGTCAGTGTTCCGTGACGGAGTTAGGTATGGAGCCGGAATTGGCCCTGGAGTGTATGACATTCACTCCCCAAGAATACCACCAACTGAAGAAATTGCTGATAGGATCAATCAGATGCTTGCAGTGCTTGAGCGAAACATTTTGTGGATCAACCCTGATTGTGGGCTCAAGACTCGCAAGTACACTGAGGTGAATCCAGCCCTCACAAACATGGTTGCTGCCACAAAACTCATCCGTAACCAGCTTGCCAGTGGCAAGTGA 2319 0.467 MASEHITMASHIVGYPRMGPKRELKFALESFWDGKSSTEDLQKVAADLRASIWKQMTDVGIKYIPSNTFSYYDQVLDATAMLGAVPPRYGWTGGEIGFDTYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVNFTYASHKAVNEYKEAKALGVDTVPVLIGPVSYLVLSKPAKGVDKSFCLLSLLPKVLAVYKEVVADLKAAGALWIQFDEPILVLDLDSQKLQAFSAAYTELESALSGLNVLIETYFADVPAEAYQTLTALNGVTAFGFDLVRGTKTLDLIKGGFPSGKYLFAGVVDGRNIWANNLAASLNTLNSLEGIVGKDKLVVSTSCSLLHTAVDLVNETKVDNEIKSWLAFAAQKVVEVNALAKALSGQKDEAFFSSNAAAQASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSSRLDAQQKKLNLPILPTTTIGSFPQTVELRRVRREYKANKISEEEYVNAIKEEIRKVVELQEQLDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSTAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQAHYLDWAVHSFRITNVGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFRDGVRYGAGIGPGVYDIHSPRIPPTEEIADRINQMLAVLERNILWINPDCGLKTRKYTEVNPALTNMVAATKLIRNQLASGK 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0385 772 TIGRFAM met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 13 767 IPR006276 GO:0003871|GO:0008270|GO:0009086
Ssu9g0385 772 Pfam Cobalamin-independent synthase, Catalytic domain 439 762 IPR002629 GO:0003871|GO:0008270|GO:0009086
Ssu9g0385 772 Gene3D - 12 532 IPR038071 -
Ssu9g0385 772 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 8 767 IPR006276 GO:0003871|GO:0008270|GO:0009086
Ssu9g0385 772 SUPERFAMILY UROD/MetE-like 10 402 IPR038071 -
Ssu9g0385 772 SUPERFAMILY UROD/MetE-like 404 767 IPR038071 -
Ssu9g0385 772 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 8 772 - -
Ssu9g0385 772 PIRSF Met_synth_MetE 7 772 IPR006276 GO:0003871|GO:0008270|GO:0009086
Ssu9g0385 772 Gene3D - 397 765 IPR038071 -
Ssu9g0385 772 Pfam Cobalamin-independent synthase, N-terminal domain 10 322 IPR013215 GO:0003871|GO:0008270|GO:0008652
Ssu9g0385 772 PANTHER COBALAMIN-INDEPENDENT METHIONINE SYNTHASE 8 772 - -
Ssu9g0385 772 CDD CIMS_C_terminal_like 440 763 IPR002629 GO:0003871|GO:0008270|GO:0009086
Ssu9g0385 772 CDD CIMS_N_terminal_like 10 374 - -
Ssu9g0385 772 Coils Coil 467 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0385 Ssu-Chr9 19127026 19131511 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0385 K00549 - gmx:100811317 1442.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1747 4 31503945 31508055 Ssu9g0385 9 19127026 19131511 PCT