Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0030 ATGCAGACCAAGGGCGCCGcacaaatttacaaaaacacCCTCGACGCGGTCGCTAAGACCTTCCAGTCGAAGGGCCTCCTCGGCTTCTACAGCGGCGTCTCCGCCGTCGTCGTCGGCTCCACCGCGTCCTCCGCCGTCTACTTCGGCACCTGCGAGTTCGGCAAGTCCTTCCTCGCCAAACTCGAATCCTTCCCCGCCGTCCTCATCCCCCCCGCCGCCGGCGCCATGGGCAACGTCGCCTCCTCCGCCATCATGGTCCCCAAGGAGCTCATCACGCAGCGCATGCAGGCCGGCGCGAAGGGCCGCTCCTGGCAAGTGTTCCTCGAGATTCTCCAAAACGACGGCGTCATGGGCCTCTACGCGGGCTACTTCGCTACCCTGCTCCGAAACCTACCCGCTGGCGTTCTGAGTTACTCGTCGTTTGAGTACTTAAAAGCCGCGGTGTTGCGAAGGAGCGAGAAGAGCCATTTAGAACCGGTTCAGAGCGTCTTGTGTGGGGCCCTCGCGGGGGCTATCTCCGCGTCCCTTACGACGCCGTTGGACGTGGTGAAGACGAGGCTGATGACGCAGGTGCGCGGGGAGGGGGTGAGCAAGGTCGCGGCGGTTATGTACGGTGGCGTTTCGGAGACCGTGAAGCAGATTTTGAAGGAGGAGGGTGGGTGGGCCTGA 669 0.6218 MQTKGAAQIYKNTLDAVAKTFQSKGLLGFYSGVSAVVVGSTASSAVYFGTCEFGKSFLAKLESFPAVLIPPAAGAMGNVASSAIMVPKELITQRMQAGAKGRSWQVFLEILQNDGVMGLYAGYFATLLRNLPAGVLSYSSFEYLKAAVLRRSEKSHLEPVQSVLCGALAGAISASLTTPLDVVKTRLMTQVRGEGVSKVAAVMYGGVSETVKQILKEEGGWA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0030 222 Pfam Mitochondrial carrier protein 72 149 IPR018108 -
Ssu9g0030 222 Pfam Mitochondrial carrier protein 156 219 IPR018108 -
Ssu9g0030 222 Pfam Mitochondrial carrier protein 3 60 IPR018108 -
Ssu9g0030 222 SUPERFAMILY Mitochondrial carrier 3 220 IPR023395 -
Ssu9g0030 222 ProSiteProfiles Solute carrier (Solcar) repeat profile. 65 147 IPR018108 -
Ssu9g0030 222 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 219 - -
Ssu9g0030 222 PANTHER PROTEIN MITOFERRINLIKE 1, CHLOROPLASTIC 1 219 - -
Ssu9g0030 222 ProSiteProfiles Solute carrier (Solcar) repeat profile. 157 222 IPR018108 -
Ssu9g0030 222 Gene3D Mitochondrial carrier domain 1 222 IPR023395 -
Ssu9g0030 222 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 57 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0030 Ssu-Chr9 4172075 4172743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0030 1 219 Organic Solute Cotransporters AT3G55640 27.155 4.64e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0030 K15111 - gmx:100805903 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0030 9 4172075 4172743 Ssu9g0030 9 4172075 4172743 ECH