Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0025 ATGAGACTAGCGTGTTCAGTCTGGTTTCTAAACCAATGGAGGCCTTGGAGTGGCTTTATTGGGAGGTTTCAAAATAGAAGTGACTGGAATGATAGATCGTTTAGAGATTGGAGTCAGAGTCAGTTTAACTACCATGACCAAGTTCCTCATCATGGTTGGGATTTCCACTATGCTGGTGGTACATATGTACCTCATCAAACCTCTGGACCAACTACTCCTGCTGTAGCACCAGTACACCAGCCACAACCAGTGGCTTGTTGTAAAATTTGTGATGTTAAGTTGGGTAGTTGCAAAAATGTGGAAGCACATAATAATGGAAAGAAACATCGAAGAATGTTGAATCTACATGAGGAATTACAGAGACTAAGAATTTCAAATGGACAGATTCCAAATTCTCAAATGAATTTAGTAGTTCAACCTAAGACAGTTCTGAAATCTGGGAAAAATGGATGCCTAGGAAAAAATGTGAGTTCTGAAGCTACTATTGCCAAGCAAAAGAATTACCTGCAGAAAGATACAGGGGTTACTTCTGAAGTTCCAGCCGAAGGGAAAGCCAGGGATAACACTGGTGCACAGGGCCATAAGCGTAAGATTGGTGGAGCCAAAACAGGTAAATACATGAAGACAAATGATGGGGTAAGAAGACCCATGGATTCATCAAAACTTGATATCAATTCTCTGTCAGATTCTATAGCATCTCCTGTACAAATACCTGCATTAACACTACATCCAGCTGTGACATCCCATAGAATGGCATCAACGCCTGTAGTGGGATCAAGTTTCAAGCTACCATATCAGCATGTCTCTGCCTCACAGACACAAGTATTGGGAGGCAAAGAATATCATGAGATTCAAAATCCTACTGTAGAAACAAATGATCAGCCACATGCCCCCGCAGATTCTAATATTAACACCCAACCTGAAGATGTGAATTATGATTCTGCAGCAAGAGCAATAAGACCACCGAAAGTGGCATACTGTAAAATCTGTGAGGTTCAGCTACCCACTtgcaaaattaatgaattggaAATACATAACAATGGAAAGAGACATCAAAGAATGTTGAAACTACATGAGGAATTACAGAGACTAAAATCTTCAAATGGACAGATTCCAAATTCTCAAAAGAAATTAGTAGTTCAACCTAAGACAGTTCGGATATCTGGGAAAAATAGACACCCGCCAAAAAATATGAGTTCTGGAGCTAGTATTTCGAAGCACAAGAATTACCTGCCGAAAGATATGGGGCTGACTTCTGAAATTCCAGCTAAAGGACCTAAAAGGAAACCTAGGGATAAAAATGATGCACAGGGTCATGGTTTCAAGTATAAGATTATAGGAGTCAAAACCGGTAAATACCTAAAGACAAATGATGGGGTAAGAAGACCCATGGAATCATCAAAACTCAATATCAATTCTCTATCAAAAACTGTAGAATCTCCTGTACAAAAGTCAATACCTGCATTGGCACCACTGCCGGGGCCTGTGGCTTCTCAGATAATGGCACCAACACTTGTAGTGGGATCAAGTTTCGAGCTACAGTTACAACATGTTTCAGCTTCACAGATCCACATATCAGAAGGCAAAGAACATCATGAGATTCAAAATCCTACTGTAGAAATGACTGATCAGCCACATGCCCCTGCAGATTCTAATATTAACACCCAAACTGAAGATATGAGTTTGGATTCTACAGCAGTAGCAATGGCATCATCGGAAGGGTTTATGGCATCTCAGGTATTTGCACCATCACCGGCAGTGGGATCAAGTTTTGAACCCCAAATTCAACATGTTTTGCAGACAGAAGTGTCAGAAAGCAAAGTGCATAATGAGGTTCAGAATCCTACTGCAGAAACAAATGATCAGCCACAATCAATCTCACTGGAGTTGCATGCCCCAGTAGATTCAAATATTAACACACGAACCGATGTGAGTTCTGATACTGAAGCAATAGCAATAGGACCACCAAAAGGGCTTATGGAATCTCATGCATTTGAACTATCACCAGCAGTGGGATCAAGTTTTGAACCCCAAATTCAACATGTTTTGCAGACAGAAGTGTCAGAAAGCAAAGTGCATAATGAGGTTCAGAATCGTACTGCGGAAACAAATGATCAGCCACAATTAATCTCACTGGAGTTGCATGCCCCAATAGGTTCAGATATTAACACCCAAACCAATGTGAGTTCTGATACTGAAGCAATAGCAATAGGACCACCAAAAGGGCTTACGGAATCTCATGCATTTGAACTATCACCAGCAGTGGGATCAAGTTTTGAACCCCAAATTCAACATGTTTTGCAGACAGAAGTGTCAGAAAACAAAATGCATAATGAGGTTCAGAATCCTACTGCAGAAACAAATGATCAGCCACAATCAATCTCAGTAGAGTTACATGCCCCTACTGGTTCTGATATTAGCACCCAAACTGAAGATGTGACTTCTGATTCTGCAGCAGTGGCAATAGGACCAGCATGTCAGGTATCCATACCACCAACAGCAGTGGGATCAAGTTTTGAACCCCAAATTCAACAAGTTTTACATATTGAAACAGAACCCCAATTATCAAAAGACACAACAGATTGTGAGAGCCAAAATTGTACTGATGAGAAAAACAATCAGCTGCTGCCATCAGTTGTAGTAGAGTTCAATTCCCCTTCAGGTTCCTGTACTAACACCCAAACTGCAGATGGATGTTCCAAAGGTGAACAAAATATGGATATTCTCACCGATCAATCAGGGACAACTCAGCTGTCTCAGGTAGCTGTTTGTCTTAAGTGTGGCGATGTAGGCTTTCCAAAGACACGTGTCTTTTGCAAAAAGTGTCAGGTTTATGCACTTCACAGGTATTGTTTAGATGGGCCTGTGATTTTTACCGATGATGTTACTTGGTTTTGCGAGGATTGTGAGCCGAAGATAGTAGACACATCTTTTCATGATCAATGTACTCTTCTCCCCTCTGGAAAAAATGTCTCTCTAAATTCGGCAAAAGATGCATCTCAAGCCAGAACAGAGTCAAAAGATTGCGTAGAGAGAGTAAAGAACAAGAAGCAAAAGCCACGAAGTATTGCAGCTAAATCAAAGGAGCTGTTATCTGATAATCACAGTTTGTCTCGTCATGGGTTGTCTCAATGCAGTAACAAcagcaaaaaggaaaaaaagtttgaGAAAAAGTGTCAACCAGTTCCAAGAGATCAAGCTAGTACTAGTGAGGGGTCTATGATTGTTACTGTTCCACAGCCTATTGCTGATCCAGTCTGGAGGGGAAGTTTGCACCTAATCGACCCAAGTTTTGGTACTGTCATTGGGCTTCTGGCCCATATCTCCACTTTAGCTTGCTCCAAAGTTCTGGAGGAGACAAGACTTTTCCCTGATGTGCTTTGCCCGGACTTGCTTCAAAGATCTGCGGTGTGGCCGAAGTCTTTCATGAAATGTGGACCAGATGAGGAGAGTAttgctctttatttctttcctgaTACTGAAAGTGTTGAGAGGGCCTTCGACAAGCTGGTTGATGACATGATTACCTTTGACCTTGCCATAAGAGCTGTGGTTGAAAATGCAgagcttttaatttttccttccaTATTACTTCCTGTCCAACACCGAAGATTTCAAGAAAAGTACTACTTGTGGGGGGTCTTCAGATCAAAGAAAACTTCAGACAGTACTAATGATGCGCTATGTGGAGAGGTTGCTAGGATATTGACAAGCCCTTAA 3720 0.4054 MRLACSVWFLNQWRPWSGFIGRFQNRSDWNDRSFRDWSQSQFNYHDQVPHHGWDFHYAGGTYVPHQTSGPTTPAVAPVHQPQPVACCKICDVKLGSCKNVEAHNNGKKHRRMLNLHEELQRLRISNGQIPNSQMNLVVQPKTVLKSGKNGCLGKNVSSEATIAKQKNYLQKDTGVTSEVPAEGKARDNTGAQGHKRKIGGAKTGKYMKTNDGVRRPMDSSKLDINSLSDSIASPVQIPALTLHPAVTSHRMASTPVVGSSFKLPYQHVSASQTQVLGGKEYHEIQNPTVETNDQPHAPADSNINTQPEDVNYDSAARAIRPPKVAYCKICEVQLPTCKINELEIHNNGKRHQRMLKLHEELQRLKSSNGQIPNSQKKLVVQPKTVRISGKNRHPPKNMSSGASISKHKNYLPKDMGLTSEIPAKGPKRKPRDKNDAQGHGFKYKIIGVKTGKYLKTNDGVRRPMESSKLNINSLSKTVESPVQKSIPALAPLPGPVASQIMAPTLVVGSSFELQLQHVSASQIHISEGKEHHEIQNPTVEMTDQPHAPADSNINTQTEDMSLDSTAVAMASSEGFMASQVFAPSPAVGSSFEPQIQHVLQTEVSESKVHNEVQNPTAETNDQPQSISLELHAPVDSNINTRTDVSSDTEAIAIGPPKGLMESHAFELSPAVGSSFEPQIQHVLQTEVSESKVHNEVQNRTAETNDQPQLISLELHAPIGSDINTQTNVSSDTEAIAIGPPKGLTESHAFELSPAVGSSFEPQIQHVLQTEVSENKMHNEVQNPTAETNDQPQSISVELHAPTGSDISTQTEDVTSDSAAVAIGPACQVSIPPTAVGSSFEPQIQQVLHIETEPQLSKDTTDCESQNCTDEKNNQLLPSVVVEFNSPSGSCTNTQTADGCSKGEQNMDILTDQSGTTQLSQVAVCLKCGDVGFPKTRVFCKKCQVYALHRYCLDGPVIFTDDVTWFCEDCEPKIVDTSFHDQCTLLPSGKNVSLNSAKDASQARTESKDCVERVKNKKQKPRSIAAKSKELLSDNHSLSRHGLSQCSNNSKKEKKFEKKCQPVPRDQASTSEGSMIVTVPQPIADPVWRGSLHLIDPSFGTVIGLLAHISTLACSKVLEETRLFPDVLCPDLLQRSAVWPKSFMKCGPDEESIALYFFPDTESVERAFDKLVDDMITFDLAIRAVVENAELLIFPSILLPVQHRRFQEKYYLWGVFRSKKTSDSTNDALCGEVARILTSP 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0025 1239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 907 987 IPR013083 -
Ssu9g0025 1239 PANTHER - 920 1231 - -
Ssu9g0025 1239 MobiDBLite consensus disorder prediction 993 1068 - -
Ssu9g0025 1239 Gene3D Classic Zinc Finger 77 118 - -
Ssu9g0025 1239 MobiDBLite consensus disorder prediction 180 216 - -
Ssu9g0025 1239 SMART ZnF_U1_5 322 358 IPR003604 GO:0003676|GO:0008270
Ssu9g0025 1239 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Ssu9g0025 1239 SUPERFAMILY FYVE/PHD zinc finger 919 973 IPR011011 -
Ssu9g0025 1239 PANTHER OS12G0161900 PROTEIN 920 1231 - -
Ssu9g0025 1239 SUPERFAMILY beta-beta-alpha zinc fingers 67 116 IPR036236 -
Ssu9g0025 1239 MobiDBLite consensus disorder prediction 369 438 - -
Ssu9g0025 1239 MobiDBLite consensus disorder prediction 1001 1035 - -
Ssu9g0025 1239 MobiDBLite consensus disorder prediction 1046 1061 - -
Ssu9g0025 1239 MobiDBLite consensus disorder prediction 424 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0025 Ssu-Chr9 3412378 3417714 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0025 - - aprc:113867399 1298.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0025 9 3412378 3417714 Ssu9g0025 9 3412378 3417714 ECH