Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0013 ATGCTAAATTCAGGTCAAAGTCCAGATTCTATTGCCTTTGTTGCAATTCTCTCAGCTTGTAGCCATTCAGGATTACTCAATGAAGGGAAGTTTTACTTTAAGCAGATGACAGATGATTACAGAATAACACCAAGAATTGAACACTTTGCTTGTTTGGTGGATCTTTTAGGACGAGCTGGCCAAGTAGATGAGGCCTATAATTTCATCAAACAGATGCCAATGGAGCCTAATGAAAGAGTTTGGGGGGCACTGCTTAGTTCATGTCGGGTGTACTCCAACATGGATATTGGGCTGTTAGCAGCTGACAAACTACTTCAGTTGGCTCCTGAGCAATCGGGTTACTATGTGttgttatctaatatttatgCAAAGGCTGGTAGATGGACAGAAGTAACAGCTATTCGATCACTaatgaagagaagaagaatTCGGAAAATGCCTGGCATCAGCAATGTTGAGCTGAATAACCAGGTCCACACCTTTCTTGCAGGTGACACATCACACCCACAGTCAAAGGAGATATATGAAGAGCTAAGTGTGCTGGTGGGGAAGATGAAAGAGTTAGGTTATGTCCCTGAGACTGATTTTGCTCTTCATGATGTGGAGGAGGAGGATAAAGAATGTCATCTAGCTGTTCACAGTGAGAAGTTAGCTATTGTGTTTGCTATTTTGAATACCCAAGAATCTCCAATCAGAATTACAAAAAACCTCCGTGTTTGTGGAGATTGTCATATTGCTGCCAAGCTTATCTCAAGATAG 759 0.4032 MLNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYRITPRIEHFACLVDLLGRAGQVDEAYNFIKQMPMEPNERVWGALLSSCRVYSNMDIGLLAADKLLQLAPEQSGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTSHPQSKEIYEELSVLVGKMKELGYVPETDFALHDVEEEDKECHLAVHSEKLAIVFAILNTQESPIRITKNLRVCGDCHIAAKLISR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0013 252 Pfam DYW family of nucleic acid deaminases 189 252 IPR032867 GO:0008270
Ssu9g0013 252 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 252 - -
Ssu9g0013 252 Pfam E+ motif 158 184 IPR046849 -
Ssu9g0013 252 Gene3D Tetratricopeptide repeat domain 1 159 IPR011990 GO:0005515
Ssu9g0013 252 Pfam PPR repeat 51 73 IPR002885 -
Ssu9g0013 252 Pfam PPR repeat 12 38 IPR002885 -
Ssu9g0013 252 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 252 - -
Ssu9g0013 252 Pfam E motif 91 153 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0013 Ssu-Chr9 2617445 2618203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0013 1 251 Glycoside Hydrolase AT3G49170 48.047 3.10e-79 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0013 - - gmx:100787841 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0013 9 2617445 2618203 Ssu9g0013 9 2617445 2618203 ECH