Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1940 ATGTCAATGTCAGGATTTGAAGGGCAATGTAGTAATGATGAGATTAGAGAGAGAAGGTCGGATGTTGAGAACTCGGAGGACGAGAGGCGGCGGTCGAGAATTGGGACCTTGAAGAAGAAGGCGATGAATGCGTCGTCGAGGTTCACTCATTCGCTTAAGAAGAGAGGGAAGAGGAAAATTGATTATCGGGTTCCGTCGGTGTCCATTGAGGATGTAAGAGATGCGCGGGAGGAGACTGCCGTCCACGAATTGCGCCAAAAACTTGTTGAAAGGGGATCTTTACCTCCTAGGCATGATGACTATCACACATTGTTAAGGTTTCTTAAAGCTAGGGACTTTAACTTTGAGAAGACAATTCAGATGTGGGAAGAAATGCTTACATGGCGAAAGGAATATGGAACTGATACCATCCTTGAGGATTTTGAATTTGGAGAGCTGGAAGAAGTATTGCAGTATTATCCTCAAGGTTACCATGGGATTGATAAGGAAGGTAGGCCGGTTTACATTGAGAGACTTGGGAAAGCCCATCCAAGCCGCCTAATGCGCATCACCACAATAGATCGATATTTGAAATACCACGTCCAGGAGTTTGAGAGGACCCTGCAGGAGAAATTTCCAGCATGCTCCATTGCAGCAAAGAGACAGATttcttcaacaacaacaatattggATGTACAGGGCTTGggaatgaaaaattttacacgtacTGCTGCAAATATCTTGTCTGCTATGACAAAAATAGATAGCAGTTACTATCCTGAGACATTACATCAAATGTATGTTGTCAATGCTGGTTCTGGCTTTAAGACGATGCTTTGGCCTGCTGCACAGAAGTTTCTTGATTCCAAAACTATTGcaaagatacagATTCTTGAACCCAagtctttatataaattactgGAAGTCATTGAGTCTAGTCAGTTGCCAGACTTTCTGGGTGGTTCTTGTACATGTGCTGCAGAAGGTGGATGTCTTCGGTCCAACAAAGGTCCGTGGAATGATCCTGATATCATGAAGCTGGTACATAATGCGGAGGCAACATTTGTGAGGCAAATCACCAGAGTGCTCATTGGACAACAGAAAATTGACTCCTTTCAAATGCATCCACTGAAGGAACGATGCAGTGATGCATCAACAGCTGAATCAGGGTCTGATATTAACGATTACTCCTCTCCCATCGGACAGGGGAGCTGTCCTTATCCTCATTTAGCCCCAGTACATGAAGAAGTTAAAGCACCATATCTCAATGGCTACTACAGTTGTGATGATAGTGCTCTAGCAGTTGAGAAAGTGATTGAAAGTGATCACTTTCACCTTAATCAAGAGCAGCCACTGCAAACTAATGATATAGGGAATGTTGCTTGTAGAACAGATTCAGGAGGTACTTTTGTCAGCAATTTGTTCAGcattgttaaagaaaaagtagagaaaataaaTGTCTTATATGTGGCAAGAGTGCTGACATTTTTCATGGAAAAACTAATTACACTCTTCGGCTATTTAAGATTCGAATTTTGGGGAACACAGAACAATGTTCACCCATCAATTACCATGGAACATAACATTAATAACCATTCAGCAGCTGTTGAAGCAGCTTCTGAAACAGATTTTATTCTTCCATGTGTACAACGTCTTCAGAGACTAGAAAAAGTCTTTGAGGAACTTAACAACAAACCTGATGGTATGCCTGTGGAGAAGGAACAAATGCTTATGGATTCCATGGATAGAATTAAGTCTGTTGAGTTTGACCTTGAAAAGACCAAGAGGGTACTACATGCTGCAGTGATGAAGCAGCTTGAGATTGCTGAATTGCTGGAGAACATGAAGAAATCAAAGTGCCAAGTAAGTTGGACCTtgaataatatttctatattcaatttttgtaaGGCTATTCAATGTGTGGTTGACATTAATGAACTGTTATCTGAATGA 1932 0.3949 MSMSGFEGQCSNDEIRERRSDVENSEDERRRSRIGTLKKKAMNASSRFTHSLKKRGKRKIDYRVPSVSIEDVRDAREETAVHELRQKLVERGSLPPRHDDYHTLLRFLKARDFNFEKTIQMWEEMLTWRKEYGTDTILEDFEFGELEEVLQYYPQGYHGIDKEGRPVYIERLGKAHPSRLMRITTIDRYLKYHVQEFERTLQEKFPACSIAAKRQISSTTTILDVQGLGMKNFTRTAANILSAMTKIDSSYYPETLHQMYVVNAGSGFKTMLWPAAQKFLDSKTIAKIQILEPKSLYKLLEVIESSQLPDFLGGSCTCAAEGGCLRSNKGPWNDPDIMKLVHNAEATFVRQITRVLIGQQKIDSFQMHPLKERCSDASTAESGSDINDYSSPIGQGSCPYPHLAPVHEEVKAPYLNGYYSCDDSALAVEKVIESDHFHLNQEQPLQTNDIGNVACRTDSGGTFVSNLFSIVKEKVEKINVLYVARVLTFFMEKLITLFGYLRFEFWGTQNNVHPSITMEHNINNHSAAVEAASETDFILPCVQRLQRLEKVFEELNNKPDGMPVEKEQMLMDSMDRIKSVEFDLEKTKRVLHAAVMKQLEIAELLENMKKSKCQVSWTLNNISIFNFCKAIQCVVDINELLSE 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1940 643 SMART sec14_4 145 317 IPR001251 -
Ssu8g1940 643 Pfam CRAL/TRIO, N-terminal domain 98 124 IPR011074 -
Ssu8g1940 643 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 18 611 - -
Ssu8g1940 643 CDD SEC14 146 314 IPR001251 -
Ssu8g1940 643 SUPERFAMILY CRAL/TRIO domain 145 341 IPR036865 -
Ssu8g1940 643 MobiDBLite consensus disorder prediction 1 33 - -
Ssu8g1940 643 Gene3D - 57 132 - -
Ssu8g1940 643 SUPERFAMILY CRAL/TRIO N-terminal domain 74 141 IPR036273 -
Ssu8g1940 643 Gene3D - 133 346 IPR036865 -
Ssu8g1940 643 Pfam CRAL/TRIO domain 151 314 IPR001251 -
Ssu8g1940 643 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH13 18 611 - -
Ssu8g1940 643 MobiDBLite consensus disorder prediction 11 33 - -
Ssu8g1940 643 SMART CRAL_TRIO_N_2 100 125 IPR011074 -
Ssu8g1940 643 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 145 320 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1940 Ssu-Chr8 50380993 50385059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1940 98 322 Acyl Lipid Metabolism Gene Families AT1G55840 31.330 2.03e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1940 - - gmx:100818938 1149.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1940 8 50380993 50385059 Ssu8g1940 8 50380993 50385059 ECH