Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1319 ATGATGTCTGTGACAAGCAAAAGCGTTGATTTTGCTGGCAAAAACTTGGTCTCCTGTGGCTGCTCTTCCAATGCTTCGTTTGACAGGTACAAGGTGAGGAACTACGCGAAGGTGAATTCTAAAGGGTGTGGCAGAGGCCATGGTGCTCGTAAATTGGTGTGTTGTAAGAGGAGGAACACTCAATGTCGGGTTTCTTCTATGAAGATTGCTGAGCCTACGGTGAATGGGGGGACTAAAGCAATTGAAGGCATTACCACAGGATTGGACTTAAAGGGTTTTTCTGAAGCCCCCATTTCCACGGCTAGGTTGTTTGAAGTGGTTGCTGATGATTTGCTAACTCTCAATAAAAATCTTCAGTCGATTGTAGGCGCGGAAAATCCAGTTCTAATGTCTGCAGCTGAGCAGATTTTTAGTGCTGGTGGGAAGAGGATGAGACCAGCTCTGGTGTTCTTGGTGTCAAGGGCGACTGCAGAGTTACTTGGCTTGAAGGAACTTACTGTAAAGCATCGACGTTTAGCAGAGATAATTGAAATGATTCATACTGCAAGTTTGATACATGATGATGTACTAGATGAGAGTGACCTTCGACGAGGGAAGAAAACTGTTCATCAAATGTTTGGAACAAGAGTTGCAGTGCTGGCTGGAGACTTCATGTTTGCACAGTCATCATGGTATCTAGCCAACCTTGAAAATATTGAAGTCATTAAACTTATCAGCCAGGTGATCAAAGATTTTGCAAGTGGGGAAATAAGGCAGGCTTCTAGCCTGTTTGATTGCGATGTTCAACTTGACGAGTATCTAATTAAGAGCTATTATAAGACAGCATCCTTGATTGCTGCAAGTACAAAAGGAGCTGCGATCTTTAGCGGTGCTGACAGCAGCATCAGTGAGAAAATGTATGAATATGGAAAGAATCTTGGTCTATCCTTCCAAGTTGTGGATGACATATTGGATTTCACGCAATCAGCGGAGCAACTGGGAAAGCCTGCTGGCACTGACCTTGCCAAGGGTAACCTGACCGCACCTGTAATTTTCGCATTGGAGAAAGAACCAAAATTGAGGGATATCATTGAGTCTGAATTCAGTGAGTTTGGCTCCCTTGATGAGGCCATCAATTTGGTCAAAAGTAGTGGGGGCATTGAAAGAGCACAAGAGTTAGCAAAAGAGAAAGCTGATCTTGCAATTCAAAGTCTCCAAAGCCTTCCTCAGAGTGTGTTTCGTTTAGCTCTTGAGGATATGGTGGCATATAATCTTCAACGGATTGCATAA 1269 0.4366 MMSVTSKSVDFAGKNLVSCGCSSNASFDRYKVRNYAKVNSKGCGRGHGARKLVCCKRRNTQCRVSSMKIAEPTVNGGTKAIEGITTGLDLKGFSEAPISTARLFEVVADDLLTLNKNLQSIVGAENPVLMSAAEQIFSAGGKRMRPALVFLVSRATAELLGLKELTVKHRRLAEIIEMIHTASLIHDDVLDESDLRRGKKTVHQMFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIRQASSLFDCDVQLDEYLIKSYYKTASLIAASTKGAAIFSGADSSISEKMYEYGKNLGLSFQVVDDILDFTQSAEQLGKPAGTDLAKGNLTAPVIFALEKEPKLRDIIESEFSEFGSLDEAINLVKSSGGIERAQELAKEKADLAIQSLQSLPQSVFRLALEDMVAYNLQRIA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1319 422 ProSitePatterns Polyprenyl synthases signature 2. 306 318 IPR033749 -
Ssu8g1319 422 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5 421 - -
Ssu8g1319 422 SFLD Isoprenoid Synthase Type I 132 415 - -
Ssu8g1319 422 CDD Trans_IPPS_HT 124 420 IPR000092 GO:0008299
Ssu8g1319 422 Pfam Polyprenyl synthetase 128 373 IPR000092 GO:0008299
Ssu8g1319 422 Gene3D Farnesyl Diphosphate Synthase 99 421 IPR008949 -
Ssu8g1319 422 SUPERFAMILY Terpenoid synthases 101 420 IPR008949 -
Ssu8g1319 422 ProSitePatterns Polyprenyl synthases signature 1. 184 198 IPR033749 -
Ssu8g1319 422 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 5 421 - -
Ssu8g1319 422 TIGRFAM prenyl_cyano: solanesyl diphosphate synthase 98 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1319 Ssu-Chr8 24519958 24523508 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1319 K05356 - gmx:100783538 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1319 8 24519958 24523508 Ssu8g1319 8 24519958 24523508 ECH